RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 DDX53Q86TM3 631 aaKnown RBP13.24□□□□□ -0.29
USP42-206ENST00000479544 MINDY1Q8N5J2 469 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 ITPAQ9BY32 194 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 RHCGQ9UBD6 479 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 PTCH2Q9Y6C5 1203 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 UBR2Q8IWV8 1755 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 H0YJX3 145 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 I3L521 148 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 M0R129 80 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 CKMT1AP12532 417 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 ALDH7A1P49419 539 aaKnown RBP13.24□□□□□ -0.29
USP42-206ENST00000479544 HIST2H2ACQ16777 129 aaPredicted RBP13.24□□□□□ -0.29
USP42-206ENST00000479544 HIST2H2AA3Q6FI13 130 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 LCN8Q6JVE9 175 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 C11orf88Q6PI97 169 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.24□□□□□ -0.29
USP42-206ENST00000479544 USP43Q70EL4 1123 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 VTCN1Q7Z7D3 282 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 TIGD4Q8IY51 512 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 ELMOD2Q8IZ81 293 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 OR13J1Q8NGT2 312 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 BRSK1Q8TDC3 778 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 GTF3C2Q8WUA4 911 aaPredicted RBP13.24□□□□□ -0.29
USP42-206ENST00000479544 OSBPL2Q9H1P3 480 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 CXCL16Q9H2A7 254 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 TFB2MQ9H5Q4 396 aaKnown RBP13.24□□□□□ -0.29
USP42-206ENST00000479544 TBC1D17Q9HA65 648 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 ARMC1Q9NVT9 282 aa13.24□□□□□ -0.29
USP42-206ENST00000479544 CLIC1O00299 241 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 SOX14O95416 240 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 HAPLN1P10915 354 aaPredicted RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 CD52P31358 61 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 RPIAP49247 311 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 DNAJB13P59910 316 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 RPS24P62847 133 aaKnown RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 TIGD5Q53EQ6 642 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 KLHL12Q53G59 568 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 PRR23AA6NEV1 266 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 FFAR2O15552 330 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 KERAO60938 352 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 STSP08842 583 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 NR2F6P10588 404 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 CLK3P49761 638 aaKnown RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 PTSQ03393 145 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 CYBRD1Q53TN4 286 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 UBE2R2Q712K3 238 aaPredicted RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 CYP4Z1Q86W10 505 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 CADM3Q8N126 398 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 LRRC20Q8TCA0 184 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 NTAN1Q96AB6 310 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 TMEM159Q96B96 161 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 MRGPRX2Q96LB1 330 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 ZNF641Q96N77 438 aaPredicted RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 BEX1Q9HBH7 125 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 SMCHD1A6NHR9 2005 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 MYO7AQ13402 2215 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 SLC35F4A4IF30 521 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 H0YAE9 185 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 IRAK2O43187 625 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 ADAM23O75077 832 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 HTR1BP28222 390 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 SOX4Q06945 474 aaPredicted RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 ANKRD34AQ69YU3 496 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 USP30Q70CQ3 517 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 TRMT11Q7Z4G4 463 aaKnown RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 FGD2Q7Z6J4 655 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 ARRDC4Q8NCT1 418 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 DPH2Q9BQC3 489 aaPredicted RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 GSTO2Q9H4Y5 243 aa13.23□□□□□ -0.29
USP42-206ENST00000479544 ZBTB20Q9HC78 741 aaPredicted RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 THUMPD1Q9NXG2 353 aaKnown RBP13.23□□□□□ -0.29
USP42-206ENST00000479544 AP1G1O43747 822 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 STBD1O95210 358 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 PRAMEF1O95521 474 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 GBAP04062 536 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 ENGP17813 658 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 CPTPQ5TA50 214 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 C12orf42Q96LP6 360 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 AARSD1Q9BTE6 412 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 MAF1Q9H063 256 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 CRTAC1Q9NQ79 661 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 DUS2Q9NX74 493 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 LOC730098B7Z3J9 87 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 ZNF195O14628 629 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 COQ9O75208 318 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 FYNP06241 537 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 HSD17B1P14061 328 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 CYP2A7P20853 494 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 GPX3P22352 226 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 PROZP22891 400 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 AXLP30530 894 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 IDUAP35475 653 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 NFE2L1Q14494 772 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 CRTC2Q53ET0 693 aaPredicted RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 TBPL2Q6SJ96 375 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 TMEM125Q96AQ2 219 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 IL12RB2Q99665 862 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 SAP18O00422 153 aaKnown RBP13.22□□□□□ -0.29
USP42-206ENST00000479544 PRKAR1AP10644 381 aa13.22□□□□□ -0.29
USP42-206ENST00000479544 GADD45AP24522 165 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms