RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 TBC1D1Q86TI0 1168 aaPredicted RBP3.86□□□□□ -1.79
UBR3-209ENST00000477461 HACE1Q8IYU2 909 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 BLIDQ8IZY5 108 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 C1orf87Q8N0U7 546 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 GPRC5AQ8NFJ5 357 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 UCMAQ8WVF2 138 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 ARHGEF26Q96DR7 871 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 HARBI1Q96MB7 349 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 SEPT5Q99719 369 aaPredicted RBP3.86□□□□□ -1.79
UBR3-209ENST00000477461 LITAFQ99732 161 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 TREX2Q9BQ50 279 aaPredicted RBP3.86□□□□□ -1.79
UBR3-209ENST00000477461 TEX13BQ9BXU2 312 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 SPATC1LQ9H0A9 340 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 PDZD7Q9H5P4 517 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 PSTPIP2Q9H939 334 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 KIF9Q9HAQ2 790 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 SLC38A10Q9HBR0 1119 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 BARHL2Q9NY43 387 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 CHMP5Q9NZZ3 219 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 UBA2Q9UBT2 640 aaPredicted RBP3.86□□□□□ -1.79
UBR3-209ENST00000477461 MKLN1Q9UL63 735 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 ACSL5Q9ULC5 683 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 TTC7AQ9ULT0 858 aaPredicted RBP3.86□□□□□ -1.79
UBR3-209ENST00000477461 KCNJ14Q9UNX9 436 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 ATP6V1DQ9Y5K8 247 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 PIAS3Q9Y6X2 628 aa3.86□□□□□ -1.79
UBR3-209ENST00000477461 RBBP6Q7Z6E9 1792 aaKnown RBP3.86□□□□□ -1.79
UBR3-209ENST00000477461 ZNFX1Q9P2E3 1918 aaKnown RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 A0A0G2JMZ2 1700 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 IGKV3D-20A0A0C4DH25 116 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 ESYT2A0FGR8 921 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 B4DLN1 442 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 HCRTR2O43614 444 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 SH3BP5O60239 455 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MMP1P03956 469 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 SYT1P21579 422 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MAPK4P31152 587 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 PBX3P40426 434 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 HNRNPH2P55795 449 aaKnown RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 PITX1P78337 314 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 SORDQ00796 357 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MAP2K1Q02750 393 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 GOLGA8DPQ0D2H9 430 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 GRIK2Q13002 908 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MAMLD1Q13495 774 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 KCTD2Q14681 263 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MAPRE1Q15691 268 aaKnown RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 COL28A1Q2UY09 1125 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 SNX30Q5VWJ9 437 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 FRG2Q64ET8 278 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 SIGIRRQ6IA17 410 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 FAM180BQ6P0A1 224 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 KCTD18Q6PI47 426 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 CYP20A1Q6UW02 462 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 CEACAM20Q6UY09 585 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MYPOPQ86VE0 399 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 RNF168Q8IYW5 571 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 ANKRD13CQ8N6S4 541 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 ZNF248Q8NDW4 579 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 FAM76AQ8TAV0 307 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 ZNF396Q96N95 335 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 ACOX2Q99424 681 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 RBM4Q9BWF3 364 aaKnown RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 ZMYND12Q9H0C1 365 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 ZSCAN16Q9H4T2 348 aaPredicted RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 PPP1R3EQ9H7J1 279 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 MAP3K20Q9NYL2 800 aaKnown RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 NOL7Q9UMY1 257 aaKnown RBP3.85□□□□□ -1.79
UBR3-209ENST00000477461 AMDHD2Q9Y303 409 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 PFASO15067 1338 aa3.85□□□□□ -1.79
UBR3-209ENST00000477461 PLXNB2O15031 1838 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 MGAMO43451 1857 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 MYH15Q9Y2K3 1946 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 JRKO75564 520 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 SLC25A12O75746 678 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 CNMDO75829 334 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 HOXA13P31271 388 aaPredicted RBP3.84□□□□□ -1.79
UBR3-209ENST00000477461 ARL3P36405 182 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 USP8P40818 1118 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 PRAMEP78395 509 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 SETQ01105 290 aaPredicted RBP3.84□□□□□ -1.79
UBR3-209ENST00000477461 GTF2H2Q13888 395 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 BAATQ14032 418 aaPredicted RBP3.84□□□□□ -1.79
UBR3-209ENST00000477461 SIM2Q14190 667 aaPredicted RBP3.84□□□□□ -1.79
UBR3-209ENST00000477461 FRG1Q14331 258 aaKnown RBP3.84□□□□□ -1.79
UBR3-209ENST00000477461 NONOQ15233 471 aaKnown RBP eCLIP3.84□□□□□ -1.79
UBR3-209ENST00000477461 UBE2SQ16763 222 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 ZNF876PQ49A33 203 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 ARHGEF16Q5VV41 709 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 HAUS3Q68CZ6 603 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 GTF2H2CQ6P1K8 395 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 DPPA4Q7L190 304 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 HAPLN4Q86UW8 402 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 FRMD1Q8N878 549 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 OR10V1Q8NGI7 309 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 POMGNT1Q8WZA1 660 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 IGSF8Q969P0 613 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 ZNF524Q96C55 264 aa3.84□□□□□ -1.79
UBR3-209ENST00000477461 RRNAD1Q96FB5 475 aaKnown RBP3.84□□□□□ -1.79
UBR3-209ENST00000477461 ZNF354BQ96LW1 612 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms