RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DRGXA6NNA5 263 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 ANKRD66B4E2M5 251 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 K7ERQ8 282 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 KCNK2O95069 426 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 CYP27C1Q4G0S4 372 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 ADHFE1Q8IWW8 467 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 ADGRG2Q8IZP9 1017 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 ZNF641Q96N77 438 aaPredicted RBP20.49■□□□□ 0.87
CTCF-202ENST00000401394 MGME1Q9BQP7 344 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 TM6SF2Q9BZW4 377 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 SERHLQ9NQF3 203 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 PPT2Q9UMR5 302 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 FAM20BO75063 409 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 HPRP00739 348 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 ABCB1P08183 1280 aaPredicted RBP20.48■□□□□ 0.87
CTCF-202ENST00000401394 GPR153Q6NV75 609 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 TRIM62Q9BVG3 475 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 DSN1Q9H410 356 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 ACOT13Q9NPJ3 140 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 IL37Q9NZH6 218 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 UBA2Q9UBT2 640 aaPredicted RBP20.48■□□□□ 0.87
CTCF-202ENST00000401394 PCDHGA12O60330 932 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 GPR149Q86SP6 731 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 UPF1Q92900 1129 aaKnown RBP eCLIP20.48■□□□□ 0.87
CTCF-202ENST00000401394 DACH2Q96NX9 599 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 TNKS2Q9H2K2 1166 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 TRIT1Q9H3H1 467 aaKnown RBP20.48■□□□□ 0.87
CTCF-202ENST00000401394 NAALAD2Q9Y3Q0 740 aa20.48■□□□□ 0.87
CTCF-202ENST00000401394 LOC100506127A0A0U1RQW1 187 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 NUDT7P0C024 238 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 ACVR2AP27037 513 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 ARHGEF7Q14155 803 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 ZXDCQ2QGD7 858 aaPredicted RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 SPATS1Q496A3 300 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 SPRYD7Q5W111 196 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 STEAP3Q658P3 488 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 OR4F3Q6IEY1 312 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 DNASE1L2Q92874 299 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 WDR12Q9GZL7 423 aaKnown RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 TMEM184CQ9NVA4 438 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 WWOXQ9NZC7 414 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 MBD1Q9UIS9 605 aaPredicted RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 FCF1Q9Y324 198 aaKnown RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 ULK1O75385 1050 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 DLGAP3O95886 979 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 FCGRTP55899 365 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 PTRHD1Q6GMV3 140 aaKnown RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 ZCCHC8Q6NZY4 707 aaKnown RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 TRPV1Q8NER1 839 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 PYURFQ96I23 114 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 ZBTB18Q99592 522 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 EHD1Q9H4M9 534 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 LRTM1Q9HBL6 345 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 USE1Q9NZ43 259 aa20.47■□□□□ 0.87
CTCF-202ENST00000401394 COL4A4P53420 1690 aaPredicted RBP20.47■□□□□ 0.87
CTCF-202ENST00000401394 SLC25A14O95258 325 aaPredicted RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 EPOP01588 193 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 ALDH7A1P49419 539 aaKnown RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 GABARAPL2P60520 117 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 DUSP4Q13115 394 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 DGUOKQ16854 277 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 AGAP7PQ5VUJ5 663 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 SYTL1Q8IYJ3 562 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 TTC29Q8NA56 475 aaPredicted RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 POC5Q8NA72 575 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 MCFD2Q8NI22 146 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 CAPSLQ8WWF8 208 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 STARD8Q92502 1023 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 CCDC115Q96NT0 180 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 ASPSCR1Q9BZE9 553 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 ACPTQ9BZG2 426 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 FAM8A1Q9UBU6 413 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 C5orf42Q9H799 3197 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 A0A0U1RQF3 1178 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 COL6A1P12109 1028 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 TGFBR2P37173 567 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 GATMP50440 423 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 GZMMP51124 257 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 MADCAM1Q13477 382 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 LSRQ86X29 649 aaPredicted RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 PLD3Q8IV08 490 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 MAL2Q969L2 176 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 TPD52L3Q96J77 140 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 KCNC2Q96PR1 638 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 PSKH2Q96QS6 385 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 TRMT13Q9NUP7 481 aaKnown RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 C1orf109Q9NX04 203 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 EIF3LQ9Y262 564 aaKnown RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 ARIH1Q9Y4X5 557 aaPredicted RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 F5H5T6 163 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 WBP4O75554 376 aaKnown RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 KLKB1P03952 638 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 EFL1Q7Z2Z2 1120 aaKnown RBP20.46■□□□□ 0.87
CTCF-202ENST00000401394 KCNJ9Q92806 393 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 ZHX1-C8orf76Q96EF9 292 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 VMP1Q96GC9 406 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 LATS2Q9NRM7 1088 aa20.46■□□□□ 0.87
CTCF-202ENST00000401394 CDH23Q9H251 3354 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 EFCAB9A8MZ26 197 aa20.45■□□□□ 0.86
CTCF-202ENST00000401394 FKBP9O95302 570 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms