RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KCNC1P48547 511 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 TGFBIQ15582 683 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 LPAL2Q16609 132 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 HP1BP3Q5SSJ5 553 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ZYG11AQ6WRX3 759 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 RGS9BPQ6ZS82 235 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 RAPH1Q70E73 1250 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 DET1Q7L5Y6 550 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PAQR7Q86WK9 346 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 OR5AR1Q8NGP9 310 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 NT5CQ8TCD5 201 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF480Q8WV37 535 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC3Q9BQI4 270 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 NTMT1Q9BV86 223 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 NRSN2Q9GZP1 204 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 SEMA6CQ9H3T2 930 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PRDM9Q9NQV7 894 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 LRIT1Q9P2V4 623 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 PRKAB1Q9Y478 270 aa6.79□□□□□ -1.32
LIMA1-202ENST00000394943 A0A096LPK6 155 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CDRT15L2A8MXV6 281 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 BTN3A3O00478 584 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CATP04040 527 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SMIM10L1P0DMW3 83 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PRPH2P23942 346 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SERPINB1P30740 379 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 KPNA2P52292 529 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 MAZP56270 477 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 MC2RQ01718 297 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PDAP1Q13442 181 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 USP10Q14694 798 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ZIC1Q15915 447 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ATG9BQ674R7 924 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 KLHL35Q6PF15 583 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 AMIGO1Q86WK6 493 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC25Q86WR0 208 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 LAS2Q8IYD9 372 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PLD6Q8N2A8 252 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 OR2I1PQ8NGU4 316 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 EPS8L3Q8TE67 593 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SMIM10Q96HG1 83 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 FCRL1Q96LA6 429 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 C12orf66Q96MD2 445 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CAPS2Q9BXY5 557 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC68Q9H2F9 335 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 STN1Q9H668 368 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CLK4Q9HAZ1 481 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 GPAMQ9HCL2 828 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 STK38LQ9Y2H1 464 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PCDHGA7Q9Y5G6 932 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 IGHV5-10-1A0A0J9YXX1 117 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC78A2IDD5 438 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SYCE1LA8MT33 242 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 TRIM49D1C9J1S8 452 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PLIN3O60664 434 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CD82P27701 267 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 REEP5Q00765 189 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CDC16Q13042 620 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PHKG1Q16816 387 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 FAM83EQ2M2I3 478 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 FCRL6Q6DN72 434 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SPESP1Q6UW49 350 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 HDXQ7Z353 690 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 PIWIL4Q7Z3Z4 852 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 EXOC3L1Q86VI1 746 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 AFAP1L2Q8N4X5 818 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 FAM46DQ8NEK8 389 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SMPDL3AQ92484 453 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 HAUS8Q9BT25 410 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 C2orf74A8MZ97 194 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 E5RI56 91 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 E2F3O00716 465 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SASH3O75995 380 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SYF2O95926 243 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SLC4A1P02730 911 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 FTH1P19P0C7X4 201 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ACPPP15309 386 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 NELFEP18615 380 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CHRM3P20309 590 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 OAS2P29728 719 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 MRPL19P49406 292 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CCL7P80098 99 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 IRF9Q00978 393 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ADPRMQ3LIE5 342 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SYTL3Q4VX76 610 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF542PQ5EBM4 170 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF385CQ66K41 422 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SLC30A9Q6PML9 568 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ERMP1Q7Z2K6 904 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 EFL1Q7Z2Z2 1120 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 GATAD2AQ86YP4 633 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SFTPA2Q8IWL1 248 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC126Q96EE4 140 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 FOPNLQ96NB1 174 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 TMEM74Q96NL1 305 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 OR4K3Q96R72 315 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ZPBPQ9BS86 351 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 CD244Q9BZW8 370 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 MRPL46Q9H2W6 279 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 SIRPGQ9P1W8 387 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms