RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TPK1Q9H3S4 243 aa21.87■■□□□ 1.09
TRIM28-202ENST00000341753 CAB39Q9Y376 341 aaPredicted RBP21.87■■□□□ 1.09
TRIM28-202ENST00000341753 CCL27Q9Y4X3 112 aa21.87■■□□□ 1.09
TRIM28-202ENST00000341753 NLRC5Q86WI3 1866 aa21.87■■□□□ 1.09
TRIM28-202ENST00000341753 M0QX08 132 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 CLLU1OSQ5K130 101 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 FATE1Q969F0 183 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 PYURFQ96I23 114 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 APOL5Q9BWW9 433 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 UPK1BO75841 260 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 ITGAMP11215 1152 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 PRKAR2AP13861 404 aaKnown RBP21.86■■□□□ 1.09
TRIM28-202ENST00000341753 KRT20P35900 424 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 CLK1P49759 484 aaKnown RBP21.86■■□□□ 1.09
TRIM28-202ENST00000341753 PHC1P78364 1004 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 CCDC80Q76M96 950 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 ZNF598Q86UK7 904 aaKnown RBP21.86■■□□□ 1.09
TRIM28-202ENST00000341753 ELMO1Q92556 727 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 ELOVL2Q9NXB9 296 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 SLC12A8A0AV02 714 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 PER2O15055 1255 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 EPOP01588 193 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 DBTP11182 482 aaKnown RBP21.86■■□□□ 1.09
TRIM28-202ENST00000341753 TGFBR2P37173 567 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 NEK2P51955 445 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 PRSS36Q5K4E3 855 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 MON1AQ86VX9 555 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 SETD9Q8NE22 299 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 PPP3R2Q96LZ3 170 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 THG1LQ9NWX6 298 aaKnown RBP21.86■■□□□ 1.09
TRIM28-202ENST00000341753 OSGIN1Q9UJX0 560 aa21.86■■□□□ 1.09
TRIM28-202ENST00000341753 MYO16Q9Y6X6 1858 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 PTPRDP23468 1912 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 IGLV3-10A0A075B6K4 115 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 C2orf81A6NN90 581 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 IFRD1O00458 451 aaPredicted RBP21.85■■□□□ 1.09
TRIM28-202ENST00000341753 PGLSO95336 258 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 GRK3P35626 688 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 NRIP1P48552 1158 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 IL18R1Q13478 541 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 MBTPS1Q14703 1052 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 LRIT3Q3SXY7 679 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 PARP15Q460N3 678 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 NANOGNBQ7Z5D8 188 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 TTC29Q8NA56 475 aaPredicted RBP21.85■■□□□ 1.09
TRIM28-202ENST00000341753 EFHD2Q96C19 240 aaPredicted RBP21.85■■□□□ 1.09
TRIM28-202ENST00000341753 C1orf109Q9NX04 203 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 OPTCQ9UBM4 332 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 KLHL3Q9UH77 587 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 CDKN2CP42773 168 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 IFITM2Q01629 132 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 SLC14A1Q13336 389 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 RFX4Q33E94 735 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 SOWAHCQ53LP3 525 aaPredicted RBP21.85■■□□□ 1.09
TRIM28-202ENST00000341753 C10orf120Q5SQS8 335 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 SHQ1Q6PI26 577 aaKnown RBP21.85■■□□□ 1.09
TRIM28-202ENST00000341753 LINC01599Q8WXQ3 324 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 MARCH7Q9H992 704 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 AMBNQ9NP70 447 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.85■■□□□ 1.098e-11■□□□□ 8
TRIM28-202ENST00000341753 IL37Q9NZH6 218 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 NUDT4Q9NZJ9 180 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 VPS4AQ9UN37 437 aa21.85■■□□□ 1.09
TRIM28-202ENST00000341753 RETP07949 1114 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 JUNDP17535 347 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 LIPAP38571 399 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 TAF1AQ15573 450 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-202ENST00000341753 CCDC71Q8IV32 467 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-202ENST00000341753 SYTL1Q8IYJ3 562 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 RNF167Q9H6Y7 350 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 TMEM45AQ9NWC5 275 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 PDP1Q9P0J1 537 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-202ENST00000341753 NOX1Q9Y5S8 564 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 H0Y626 953 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 FFAR2O15552 330 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 TRIM16O95361 564 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 OTCP00480 354 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 PRLP01236 227 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 SLC10A3P09131 477 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 GATMP50440 423 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 HNRNPFP52597 415 aaKnown RBP21.84■■□□□ 1.09
TRIM28-202ENST00000341753 SBSNQ6UWP8 590 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 RNF19BQ6ZMZ0 732 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 EGFL8Q99944 293 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 BCL7BQ9BQE9 202 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 AGO1Q9UL18 857 aaKnown RBP21.84■■□□□ 1.09
TRIM28-202ENST00000341753 ZNF490Q9ULM2 529 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-202ENST00000341753 ANGPTL3Q9Y5C1 460 aa21.84■■□□□ 1.09
TRIM28-202ENST00000341753 RFPL2O75678 378 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 TRIM71Q2Q1W2 868 aaKnown RBP21.83■■□□□ 1.09
TRIM28-202ENST00000341753 NADSYN1Q6IA69 706 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 DESI1Q6ICB0 168 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 CAPN13Q6MZZ7 669 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-202ENST00000341753 Q6ZPB1 254 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-202ENST00000341753 LINC00299Q6ZSB3 139 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 SPATC1Q76KD6 591 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 ZNF551Q7Z340 670 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-202ENST00000341753 VTCN1Q7Z7D3 282 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 RGL4Q8IZJ4 473 aa21.83■■□□□ 1.09
TRIM28-202ENST00000341753 HOXD1Q9GZZ0 328 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms