RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GXYLT1Q4G148 440 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SPESP1Q6UW49 350 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CERS6Q6ZMG9 384 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 DPPA2Q7Z7J5 298 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SLC30A8Q8IWU4 369 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 OR5T1Q8NG75 326 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 STK35Q8TDR2 534 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ATG4CQ96DT6 458 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 OR52B2Q96RD2 323 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 C1QTNF3Q9BXJ4 246 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ABCG4Q9H172 646 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TTC24A2A3L6 582 aaPredicted RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 SLC28A1O00337 649 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ARPC2O15144 300 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CNTN5O94779 1100 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 MAP3K6O95382 1288 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 AHSA1O95433 338 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RLN2P04090 185 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 PGRP06401 933 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 MAPK8P45983 427 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 IL2P60568 153 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 S100A10P60903 97 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GBE1Q04446 702 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ORC1Q13415 861 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ARHGEF7Q14155 803 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SYT16Q17RD7 645 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 TTLL9Q3SXZ7 439 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SLC9B1Q4ZJI4 515 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 VARS2Q5ST30 1063 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 AKR1C8PQ5T2L2 129 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 USP43Q70EL4 1123 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZNF438Q7Z4V0 828 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 FBXO39Q8N4B4 442 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 NATD1Q8N6N6 113 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ATP6V1C2Q8NEY4 427 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 OR5T3Q8NGG3 340 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GPR150Q8NGU9 434 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 LRTOMTQ8WZ04 291 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 Q96MT0 163 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GPER1Q99527 375 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CIB1Q99828 191 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GTPBP2Q9BX10 602 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 CDHR5Q9HBB8 845 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CCDC177Q9NQR7 707 aaPredicted RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 THG1LQ9NWX6 298 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 L7N2F9 121 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CXCL11O14625 94 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ENSAO43768 121 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 OR1I1O60431 355 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SH3BGRLO75368 114 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SLC16A8O95907 504 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 PTBP1P26599 531 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS35-201ENST00000299138 VAMP2P63027 116 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 EIF4HQ15056 248 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 ATG9BQ674R7 924 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZNF549Q6P9A3 640 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 PLEKHG7Q6ZR37 379 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 LINGO2Q7L985 606 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CATSPER4Q7RTX7 472 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 FAM35AQ86V20 835 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CPNE8Q86YQ8 564 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ESX1Q8N693 406 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 OR52K1Q8NGK4 314 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 TTC9Q92623 222 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 MYO19Q96H55 970 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ZNF354BQ96LW1 612 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 IFT46Q9NQC8 304 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ENPP5Q9UJA9 477 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CPQQ9Y646 472 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 MATN3O15232 486 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GRID2O43424 1007 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RAD51DO75771 328 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GRAP2O75791 330 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 RSL1D1O76021 490 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 FABP6P51161 128 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CAPZA1P52907 286 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SPP2Q13103 211 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 AIMP2Q13155 320 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 CAMK2GQ13555 558 aaPredicted RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 UBAP2Q5T6F2 1119 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 LYPLAL1Q5VWZ2 237 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 CATSPERGQ6ZRH7 1159 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 PTCHD4Q6ZW05 846 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 AMIGO1Q86WK6 493 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 DEFB106AQ8N104 65 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 TMEM132CQ8N3T6 1108 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SIMC1Q8NDZ2 872 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 PIH1D2Q8WWB5 315 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 NT5C3BQ969T7 300 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GORASP2Q9H8Y8 452 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 NEK6Q9HC98 313 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 KLHL42Q9P2K6 505 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SCAF8Q9UPN6 1271 aaKnown RBP6.28□□□□□ -1.4
VPS35-201ENST00000299138 TCRBV7S3A2A0A539 114 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 H3BRB1 525 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 SLC16A6O15403 523 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 GLP2RO95838 553 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 UGT2B4P06133 528 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ITGAMP11215 1152 aa6.28□□□□□ -1.4
VPS35-201ENST00000299138 ACPPP15309 386 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms