RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CPTPQ5TA50 214 aa15.04■□□□□ -0
SHH-201ENST00000297261 TRIM40Q6P9F5 258 aa15.04■□□□□ -0
SHH-201ENST00000297261 MRPL10Q7Z7H8 261 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 IGFN1Q86VF2 1251 aa15.04■□□□□ -0
SHH-201ENST00000297261 KRT78Q8N1N4 520 aa15.04■□□□□ -0
SHH-201ENST00000297261 C10orf53Q8N6V4 93 aa15.04■□□□□ -0
SHH-201ENST00000297261 AURKBQ96GD4 344 aaPredicted RBP15.04■□□□□ -0
SHH-201ENST00000297261 IL4I1Q96RQ9 567 aa15.04■□□□□ -0
SHH-201ENST00000297261 NUSAP1Q9BXS6 441 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 AHSPQ9NZD4 102 aa15.04■□□□□ -0
SHH-201ENST00000297261 VPS4AQ9UN37 437 aa15.04■□□□□ -0
SHH-201ENST00000297261 HSPB11Q9Y547 144 aa15.04■□□□□ -0
SHH-201ENST00000297261 H0YJX3 145 aa15.04■□□□□ -0
SHH-201ENST00000297261 I3L521 148 aa15.04■□□□□ -0
SHH-201ENST00000297261 CATP04040 527 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 HOXB6P17509 224 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 TACR2P21452 398 aa15.04■□□□□ -0
SHH-201ENST00000297261 RFC2P35250 354 aa15.04■□□□□ -0
SHH-201ENST00000297261 PTGS2P35354 604 aa15.04■□□□□ -0
SHH-201ENST00000297261 ERICH5Q6P6B1 374 aa15.04■□□□□ -0
SHH-201ENST00000297261 ANKRD13BQ86YJ7 626 aa15.04■□□□□ -0
SHH-201ENST00000297261 ANKFN1Q8N957 763 aa15.04■□□□□ -0
SHH-201ENST00000297261 ANKLE1Q8NAG6 615 aa15.04■□□□□ -0
SHH-201ENST00000297261 HDAC2Q92769 488 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 TMEM203Q969S6 136 aa15.04■□□□□ -0
SHH-201ENST00000297261 LGALS12Q96DT0 336 aa15.04■□□□□ -0
SHH-201ENST00000297261 HMCESQ96FZ2 354 aa15.04■□□□□ -0
SHH-201ENST00000297261 CORO1BQ9BR76 489 aa15.04■□□□□ -0
SHH-201ENST00000297261 EBPLQ9BY08 206 aa15.04■□□□□ -0
SHH-201ENST00000297261 ATG10Q9H0Y0 220 aa15.04■□□□□ -0
SHH-201ENST00000297261 TIGARQ9NQ88 270 aa15.04■□□□□ -0
SHH-201ENST00000297261 SLC38A8A6NNN8 435 aa15.04■□□□□ -0
SHH-201ENST00000297261 TBL1XO60907 577 aa15.04■□□□□ -0
SHH-201ENST00000297261 VEGFBP49765 207 aa15.04■□□□□ -0
SHH-201ENST00000297261 ERAP2Q6P179 960 aa15.04■□□□□ -0
SHH-201ENST00000297261 SNX29P2Q8IUI4 249 aa15.04■□□□□ -0
SHH-201ENST00000297261 SLC2A13Q96QE2 648 aa15.04■□□□□ -0
SHH-201ENST00000297261 EMILIN2Q9BXX0 1053 aa15.04■□□□□ -0
SHH-201ENST00000297261 ITPAQ9BY32 194 aa15.04■□□□□ -0
SHH-201ENST00000297261 C14orf119Q9NWQ9 140 aa15.04■□□□□ -0
SHH-201ENST00000297261 MCUBQ9NWR8 336 aa15.04■□□□□ -0
SHH-201ENST00000297261 RIMS3Q9UJD0 308 aa15.04■□□□□ -0
SHH-201ENST00000297261 CNOT11Q9UKZ1 510 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 ARL5AQ9Y689 179 aa15.04■□□□□ -0
SHH-201ENST00000297261 GABRDO14764 452 aa15.03■□□□□ -0
SHH-201ENST00000297261 HLA-DQB2P05538 268 aa15.03■□□□□ -0
SHH-201ENST00000297261 ACRP10323 421 aa15.03■□□□□ -0
SHH-201ENST00000297261 CORO1AP31146 461 aaKnown RBP15.03■□□□□ -0
SHH-201ENST00000297261 TRNP1Q6NT89 227 aa15.03■□□□□ -0
SHH-201ENST00000297261 BHLHB9Q6PI77 547 aa15.03■□□□□ -0
SHH-201ENST00000297261 RASSF6Q6ZTQ3 369 aa15.03■□□□□ -0
SHH-201ENST00000297261 USP30Q70CQ3 517 aa15.03■□□□□ -0
SHH-201ENST00000297261 RASSF5Q8WWW0 418 aa15.03■□□□□ -0
SHH-201ENST00000297261 TMEM138Q9NPI0 162 aa15.03■□□□□ -0
SHH-201ENST00000297261 CDC7O00311 574 aa15.03■□□□□ -0
SHH-201ENST00000297261 PGRMC2O15173 223 aa15.03■□□□□ -0
SHH-201ENST00000297261 NIPSNAP2O75323 286 aa15.03■□□□□ -0
SHH-201ENST00000297261 PRKCGP05129 697 aa15.03■□□□□ -0
SHH-201ENST00000297261 G6PDP11413 515 aa15.03■□□□□ -0
SHH-201ENST00000297261 LAG3P18627 525 aa15.03■□□□□ -0
SHH-201ENST00000297261 GABRR2P28476 465 aa15.03■□□□□ -0
SHH-201ENST00000297261 RPS14P62263 151 aaKnown RBP15.03■□□□□ -0
SHH-201ENST00000297261 AKIRIN2Q53H80 203 aa15.03■□□□□ -0
SHH-201ENST00000297261 OR2T5Q6IEZ7 315 aa15.03■□□□□ -0
SHH-201ENST00000297261 PGM2L1Q6PCE3 622 aa15.03■□□□□ -0
SHH-201ENST00000297261 C11orf65Q8NCR3 313 aa15.03■□□□□ -0
SHH-201ENST00000297261 OR2T29Q8NH02 315 aa15.03■□□□□ -0
SHH-201ENST00000297261 POF1BQ8WVV4 589 aa15.03■□□□□ -0
SHH-201ENST00000297261 IPCEF1Q8WWN9 437 aaPredicted RBP15.03■□□□□ -0
SHH-201ENST00000297261 TUBA1CQ9BQE3 449 aa15.03■□□□□ -0
SHH-201ENST00000297261 SEZ6LQ9BYH1 1024 aa15.03■□□□□ -0
SHH-201ENST00000297261 GPR62Q9BZJ7 368 aa15.03■□□□□ -0
SHH-201ENST00000297261 NAA50Q9GZZ1 169 aaKnown RBP15.03■□□□□ -0
SHH-201ENST00000297261 LHPPQ9H008 270 aa15.03■□□□□ -0
SHH-201ENST00000297261 C11orf16Q9NQ32 467 aa15.03■□□□□ -0
SHH-201ENST00000297261 AASDHPPTQ9NRN7 309 aa15.03■□□□□ -0
SHH-201ENST00000297261 RNF6Q9Y252 685 aa15.03■□□□□ -0
SHH-201ENST00000297261 C7orf72A4D263 438 aa15.03■□□□□ -0
SHH-201ENST00000297261 A8MU76 341 aa15.03■□□□□ -0
SHH-201ENST00000297261 ECI2O75521 394 aa15.03■□□□□ -0
SHH-201ENST00000297261 TCEA1P23193 301 aaKnown RBP15.03■□□□□ -0
SHH-201ENST00000297261 PPM1AP35813 382 aa15.03■□□□□ -0
SHH-201ENST00000297261 NCS1P62166 190 aa15.03■□□□□ -0
SHH-201ENST00000297261 LAPTM4BQ86VI4 370 aa15.03■□□□□ -0
SHH-201ENST00000297261 BBS4Q96RK4 519 aa15.03■□□□□ -0
SHH-201ENST00000297261 PAK1IP1Q9NWT1 392 aaPredicted RBP15.03■□□□□ -0
SHH-201ENST00000297261 ERVK-18Q9QC07 812 aa15.03■□□□□ -0
SHH-201ENST00000297261 ZNF232Q9UNY5 417 aa15.03■□□□□ -0
SHH-201ENST00000297261 SMIM30A4D0T7 59 aa15.02■□□□□ -0
SHH-201ENST00000297261 MYF6P23409 242 aa15.02■□□□□ -0
SHH-201ENST00000297261 VARSP26640 1264 aaKnown RBP15.02■□□□□ -0
SHH-201ENST00000297261 HTR7P34969 479 aa15.02■□□□□ -0
SHH-201ENST00000297261 INHBCP55103 352 aa15.02■□□□□ -0
SHH-201ENST00000297261 MVKQ03426 396 aa15.02■□□□□ -0
SHH-201ENST00000297261 ABRQ12979 859 aa15.02■□□□□ -0
SHH-201ENST00000297261 LRRTM3Q86VH5 581 aa15.02■□□□□ -0
SHH-201ENST00000297261 OSBPL2Q9H1P3 480 aa15.02■□□□□ -0
SHH-201ENST00000297261 CCSER2Q9H7U1 834 aa15.02■□□□□ -0
SHH-201ENST00000297261 ERVK-11Q9UQG0 969 aa15.02■□□□□ -0
SHH-201ENST00000297261 TLR6Q9Y2C9 796 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms