RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MLLT3P42568 568 aaPredicted RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 EIF5AP63241 154 aaKnown RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 PDCD4Q53EL6 469 aaKnown RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 TIGD5Q53EQ6 642 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 CYP2U1Q7Z449 544 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 C2orf73Q8N5S3 287 aaPredicted RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 SLC2A11Q9BYW1 496 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 COQ10BQ9H8M1 238 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 MKL2Q9ULH7 1088 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 PCDHGB2Q9Y5G2 931 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 IL7RP16871 459 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 FOXM1Q08050 763 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 SLC29A4Q7RTT9 530 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 FLCNQ8NFG4 579 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 VEGFDO43915 354 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 CSKP41240 450 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 SLC18A1P54219 525 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 TMEM198Q66K66 360 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 TMEM214Q6NUQ4 689 aaKnown RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 ZCCHC10Q8TBK6 192 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 PAK6Q9NQU5 681 aaPredicted RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 CD84Q9UIB8 345 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 PIK3C2AO00443 1686 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 ATRNL1Q5VV63 1379 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 AGRPO00253 132 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ARCN1P48444 511 aaKnown RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 MBLAC2Q68D91 279 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 NCBP2-AS2Q69YL0 99 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 CLEC20AQ6ZU45 233 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 AHSA2Q719I0 299 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ANKFN1Q8N957 763 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 SCAMP5Q8TAC9 235 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 C9orf43Q8TAL5 461 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 SRRDQ9UH36 339 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 SNED1Q8TER0 1413 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ADH1BP00325 375 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 C9P02748 559 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ARRB1P49407 418 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 HSF2Q03933 536 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 RGS17Q9UGC6 210 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 RPL36Q9Y3U8 105 aaKnown RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 BTN3A3O00478 584 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 CXCR6O00574 342 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 RGS20O76081 388 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 RLN1P04808 185 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 SPATS1Q496A3 300 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 TMEM110Q86TL2 294 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 GLIS1Q8NBF1 620 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 OR52J3Q8NH60 311 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 SMPDL3AQ92484 453 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 LGR4Q9BXB1 951 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 IFT46Q9NQC8 304 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 OXSMQ9NWU1 459 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 CIDEBQ9UHD4 219 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 STOML2Q9UJZ1 356 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 GRIP1Q9Y3R0 1128 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 A0A1W2PQ45 241 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 A0A1W2PQY0 241 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ELOA3DA6NLF2 546 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 TFECO14948 347 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 SLC31A1O15431 190 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 UGT1A3P35503 534 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ERVK-8P63133 956 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 HSPB3Q12988 150 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ELOA3BQ3SY89 546 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.74■□□□□ 0.59
UPF1-201ENST00000262803 SLC9B2Q86UD5 537 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 ELOA3Q8NG57 546 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 SIPA1Q96FS4 1042 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 NODALQ96S42 347 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 OR2AG1Q9H205 316 aa18.74■□□□□ 0.59
UPF1-201ENST00000262803 DCLK1O15075 740 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 TBX10O75333 385 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 GADD45GO95257 159 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 APOC1P02654 83 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 MAGP20916 626 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 ACTR1BP42025 376 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 ACTR1AP61163 376 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 FBXO15Q8NCQ5 510 aaPredicted RBP18.73■□□□□ 0.59
UPF1-201ENST00000262803 OR5K1Q8NHB7 308 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 UFD1Q92890 307 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 DGAT2Q96PD7 388 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 SCGB3A2Q96PL1 93 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 DPYSL5Q9BPU6 564 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 FAM25EA8MYX2 175 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 ITM2AO43736 263 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 PLOD3O60568 738 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 PCDH1Q08174 1060 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 IL18Q14116 193 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 SATL1Q86VE3 508 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 ZNF726A6NNF4 738 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 PEX12O00623 359 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 NRP1O14786 923 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 DUSP3P51452 185 aaPredicted RBP18.73■□□□□ 0.59
UPF1-201ENST00000262803 FAM174BQ3ZCQ3 159 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 EGFLAMQ63HQ2 1017 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 TUBGCP5Q96RT8 1024 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 TBL1XR1Q9BZK7 514 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 P2RX2Q9UBL9 471 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 DNAJB9Q9UBS3 223 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 5863.4 ms