RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ANKRD24Q8TF21 1146 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 RAPGEF4Q8WZA2 1011 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 CDC42BPGQ6DT37 1551 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 USP32Q8NFA0 1604 aa17.79■□□□□ 0.44
SHROOM1-208ENST00000617339 PNMA6EA0A0J9YXQ4 647 aa17.79■□□□□ 0.44
SHROOM1-208ENST00000617339 GAS2L3Q86XJ1 694 aa17.79■□□□□ 0.44
SHROOM1-208ENST00000617339 NUTM1Q86Y26 1132 aa17.79■□□□□ 0.44
SHROOM1-208ENST00000617339 KIAA1211Q6ZU35 1233 aa17.79■□□□□ 0.44
SHROOM1-208ENST00000617339 PI4KAP2A4QPH2 592 aa17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 GSPT1P15170 499 aaKnown RBP17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 PLEKHM2Q8IWE5 1019 aa17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 PI4KAP1Q8N8J0 262 aa17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 KAT6BQ8WYB5 2073 aa17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 FOXD4L6Q3SYB3 417 aaPredicted RBP17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 FOXD4L3Q6VB84 417 aaPredicted RBP17.78■□□□□ 0.44
SHROOM1-208ENST00000617339 OVOS2A0A0J9YW53 1432 aa17.77■□□□□ 0.44
SHROOM1-208ENST00000617339 OVOS2Q6IE36 1432 aa17.77■□□□□ 0.44
SHROOM1-208ENST00000617339 ADGRB2O60241 1585 aa17.77■□□□□ 0.44
SHROOM1-208ENST00000617339 SURF6O75683 361 aaKnown RBP17.77■□□□□ 0.44
SHROOM1-208ENST00000617339 CD2BP2O95400 341 aaKnown RBP17.77■□□□□ 0.44
SHROOM1-208ENST00000617339 PIP4K2BP78356 416 aa17.77■□□□□ 0.44
SHROOM1-208ENST00000617339 TECPR2O15040 1411 aa17.77■□□□□ 0.43
SHROOM1-208ENST00000617339 GNAI2P04899 355 aa17.77■□□□□ 0.43
SHROOM1-208ENST00000617339 NCBP3Q53F19 620 aaKnown RBP17.77■□□□□ 0.43
SHROOM1-208ENST00000617339 IGSF1Q8N6C5 1336 aa17.77■□□□□ 0.43
SHROOM1-208ENST00000617339 UBTFL1P0CB47 393 aaPredicted RBP17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 DDX54Q8TDD1 881 aaKnown RBP17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 IP6K1Q92551 441 aa17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 KIF20BQ96Q89 1820 aa17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 PIK3R4Q99570 1358 aa17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 INTS3Q68E01 1043 aaKnown RBP17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 ANKRD44Q8N8A2 993 aa17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 PRDM11Q9NQV5 511 aa17.76■□□□□ 0.43
SHROOM1-208ENST00000617339 DCTPP1Q9H773 170 aa17.75■□□□□ 0.43
SHROOM1-208ENST00000617339 UBR1Q8IWV7 1749 aa17.75■□□□□ 0.43
SHROOM1-208ENST00000617339 NUTM2BA6NNL0 878 aaPredicted RBP17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 DDX11L8A8MPP1 907 aa17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 NUTM2EB1AL46 878 aaPredicted RBP17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 HMMRO75330 724 aa17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 SDSP20132 328 aa17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 NUTM2AQ8IVF1 878 aaPredicted RBP17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 FAM13BQ9NYF5 915 aa17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 CEP170BQ9Y4F5 1589 aaPredicted RBP17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 NBPF7P0C2Y1 421 aaPredicted RBP17.74■□□□□ 0.43
SHROOM1-208ENST00000617339 PROSER3Q2NL68 480 aa17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 CWF19L2Q2TBE0 894 aaKnown RBP17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 CHMP3Q9Y3E7 222 aa17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 SRGAP3O43295 1099 aa17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 PLEKHO1Q53GL0 409 aaPredicted RBP17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 BMP2KLQ5H9B9 411 aa17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 SIL1Q9H173 461 aa17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 DNAJC5Q9H3Z4 198 aa17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 C9orf78Q9NZ63 289 aaPredicted RBP17.73■□□□□ 0.43
SHROOM1-208ENST00000617339 CDC45O75419 566 aa17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 LARP6Q9BRS8 491 aaKnown RBP17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 NCLP19338 710 aaKnown RBP17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 RPAP2Q8IXW5 612 aaPredicted RBP17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 TNPO1Q92973 898 aaKnown RBP17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 TOM1L2Q6ZVM7 507 aa17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 REREQ9P2R6 1566 aa17.72■□□□□ 0.43
SHROOM1-208ENST00000617339 RGPD8O14715 1765 aaPredicted RBP17.71■□□□□ 0.43
SHROOM1-208ENST00000617339 RIMS1Q86UR5 1692 aaKnown RBP17.71■□□□□ 0.43
SHROOM1-208ENST00000617339 NFATC2IPQ8NCF5 419 aa17.71■□□□□ 0.43
SHROOM1-208ENST00000617339 CCT4P50991 539 aaKnown RBP17.71■□□□□ 0.43
SHROOM1-208ENST00000617339 RTL1A6NKG5 1358 aa17.71■□□□□ 0.43
SHROOM1-208ENST00000617339 MAP3K5Q99683 1374 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 ANO2Q9NQ90 1003 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 PA2G4Q9UQ80 394 aaKnown RBP17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 USP31Q70CQ4 1352 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 CRB1P82279 1406 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 PPP1R42Q7Z4L9 355 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 KCNH5Q8NCM2 988 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 SRCIN1Q9C0H9 1055 aa17.7■□□□□ 0.42
SHROOM1-208ENST00000617339 R3HCC1Q9Y3T6 440 aaKnown RBP17.69■□□□□ 0.42
SHROOM1-208ENST00000617339 PTPRCP08575 1304 aa17.69■□□□□ 0.42
SHROOM1-208ENST00000617339 TPM2P07951 284 aa17.69■□□□□ 0.42
SHROOM1-208ENST00000617339 MSNP26038 577 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 TTC22Q5TAA0 569 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 ANP32BQ92688 251 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 USP44Q9H0E7 712 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 DIP2AQ14689 1571 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 VIRMAQ69YN4 1812 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 BRPF1P55201 1214 aaPredicted RBP17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 CHAMP1Q96JM3 812 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 LRRCC1Q9C099 1032 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 TAOK2Q9UL54 1235 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 ARHGEF10O15013 1369 aa17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 SETD1AO15047 1707 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-208ENST00000617339 KLHDC4Q8TBB5 520 aa17.67■□□□□ 0.42
SHROOM1-208ENST00000617339 PDCL3Q9H2J4 239 aa17.67■□□□□ 0.42
SHROOM1-208ENST00000617339 PTCD1O75127 700 aaKnown RBP17.67■□□□□ 0.42
SHROOM1-208ENST00000617339 CASC1Q6TDU7 716 aa17.67■□□□□ 0.42
SHROOM1-208ENST00000617339 MAP3K2Q9Y2U5 619 aa17.67■□□□□ 0.42
SHROOM1-208ENST00000617339 TTC5Q8N0Z6 440 aa17.67■□□□□ 0.42
SHROOM1-208ENST00000617339 ADAMTS2O95450 1211 aa17.66■□□□□ 0.42
SHROOM1-208ENST00000617339 EIF4A1P60842 406 aaKnown RBP17.66■□□□□ 0.42
SHROOM1-208ENST00000617339 GBP4Q96PP9 640 aa17.66■□□□□ 0.42
SHROOM1-208ENST00000617339 GNAI3P08754 354 aa17.66■□□□□ 0.42
SHROOM1-208ENST00000617339 NASPP49321 788 aaPredicted RBP17.66■□□□□ 0.42
SHROOM1-208ENST00000617339 C19orf44Q9H6X5 657 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms