RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 UNC5CLQ8IV45 518 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 TTC12Q9H892 705 aaPredicted RBP17.5■□□□□ 0.39
VPS35-210ENST00000568784 YEATS2Q9ULM3 1422 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 PTPRCP08575 1304 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 ANXA1P04083 346 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 CSPP1Q1MSJ5 1256 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 KIDINS220Q9ULH0 1771 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 DRC7Q8IY82 874 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 USHBP1Q8N6Y0 703 aa17.5■□□□□ 0.39
VPS35-210ENST00000568784 COL3A1P02461 1466 aaPredicted RBP17.49■□□□□ 0.39
VPS35-210ENST00000568784 CAMSAP1Q5T5Y3 1602 aa17.49■□□□□ 0.39
VPS35-210ENST00000568784 CNPY2Q9Y2B0 182 aa17.49■□□□□ 0.39
VPS35-210ENST00000568784 MCM2P49736 904 aa17.49■□□□□ 0.39
VPS35-210ENST00000568784 ADGRB2O60241 1585 aa17.49■□□□□ 0.39
VPS35-210ENST00000568784 LMOD2Q6P5Q4 547 aa17.49■□□□□ 0.39
VPS35-210ENST00000568784 DIAPH3Q9NSV4 1193 aa17.49■□□□□ 0.39
VPS35-210ENST00000568784 ACEP12821 1306 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 GOLGA6L4A6NEF3 574 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 SRGAP3O43295 1099 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 CCDC30Q5VVM6 783 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 CHMLP26374 656 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 NLRP6P59044 892 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 HDGFL1Q5TGJ6 251 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 FERMT3Q86UX7 667 aa17.48■□□□□ 0.39
VPS35-210ENST00000568784 WDR33Q9C0J8 1336 aaKnown RBP17.47■□□□□ 0.39
VPS35-210ENST00000568784 ARAP3Q8WWN8 1544 aa17.47■□□□□ 0.39
VPS35-210ENST00000568784 CCDC83Q8IWF9 413 aa17.47■□□□□ 0.39
VPS35-210ENST00000568784 CCDC9Q9Y3X0 531 aaKnown RBP17.47■□□□□ 0.39
VPS35-210ENST00000568784 JARID2Q92833 1246 aaPredicted RBP17.46■□□□□ 0.39
VPS35-210ENST00000568784 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.46■□□□□ 0.393e-9■□□□□ 9.5
VPS35-210ENST00000568784 CFAP74Q9C0B2 1584 aa17.46■□□□□ 0.39
VPS35-210ENST00000568784 TTC21BQ7Z4L5 1316 aa17.46■□□□□ 0.39
VPS35-210ENST00000568784 CYP2E1P05181 493 aaPredicted RBP17.45■□□□□ 0.38
VPS35-210ENST00000568784 GIMAP6Q6P9H5 292 aa17.45■□□□□ 0.38
VPS35-210ENST00000568784 MED14O60244 1454 aa17.45■□□□□ 0.38
VPS35-210ENST00000568784 MYO3AQ8NEV4 1616 aa17.45■□□□□ 0.38
VPS35-210ENST00000568784 CASTP20810 708 aaKnown RBP17.45■□□□□ 0.38
VPS35-210ENST00000568784 HDGFP51858 240 aaKnown RBP17.45■□□□□ 0.38
VPS35-210ENST00000568784 NAP1L2Q9ULW6 460 aaPredicted RBP17.45■□□□□ 0.38
VPS35-210ENST00000568784 CD163L1Q9NR16 1453 aa17.45■□□□□ 0.38
VPS35-210ENST00000568784 ADCY5O95622 1261 aa17.44■□□□□ 0.38
VPS35-210ENST00000568784 BRD1O95696 1058 aa17.44■□□□□ 0.38
VPS35-210ENST00000568784 PPP1R42Q7Z4L9 355 aa17.44■□□□□ 0.38
VPS35-210ENST00000568784 PIK3R4Q99570 1358 aa17.44■□□□□ 0.38
VPS35-210ENST00000568784 ZC3H13Q5T200 1668 aaKnown RBP17.44■□□□□ 0.38
VPS35-210ENST00000568784 PTPRMP28827 1452 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 ABCA9Q8IUA7 1624 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 MAP3K19Q56UN5 1328 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 FOSBP53539 338 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 PHAXQ9H814 394 aaKnown RBP17.43■□□□□ 0.38
VPS35-210ENST00000568784 PPLO60437 1756 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 TCEANC2Q96MN5 208 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 NEXMIFQ5QGS0 1516 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 CAMK4Q16566 473 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 SRCIN1Q9C0H9 1055 aa17.43■□□□□ 0.38
VPS35-210ENST00000568784 EDC4Q6P2E9 1401 aaKnown RBP17.43■□□□□ 0.38
VPS35-210ENST00000568784 CLEC17AQ6ZS10 378 aa17.42■□□□□ 0.38
VPS35-210ENST00000568784 JAKMIP1Q96N16 626 aaKnown RBP17.42■□□□□ 0.38
VPS35-210ENST00000568784 LMTK2Q8IWU2 1503 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 PRPF40BQ6NWY9 871 aaKnown RBP17.41■□□□□ 0.38
VPS35-210ENST00000568784 SASS6Q6UVJ0 657 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 C9orf78Q9NZ63 289 aaPredicted RBP17.41■□□□□ 0.38
VPS35-210ENST00000568784 FGD1P98174 961 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 ATP8B2P98198 1209 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 CHAF1AQ13111 956 aaPredicted RBP17.41■□□□□ 0.38
VPS35-210ENST00000568784 CNTROBQ8N137 903 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 MLH3Q9UHC1 1453 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 STK3Q13188 491 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 NECAB1Q8N987 351 aa17.41■□□□□ 0.38
VPS35-210ENST00000568784 METP08581 1390 aa17.4■□□□□ 0.38
VPS35-210ENST00000568784 EYA1Q99502 592 aa17.4■□□□□ 0.38
VPS35-210ENST00000568784 TAF7Q15545 349 aaPredicted RBP17.4■□□□□ 0.38
VPS35-210ENST00000568784 ATP10DQ9P241 1426 aa17.4■□□□□ 0.38
VPS35-210ENST00000568784 ARHGEF28Q8N1W1 1705 aaKnown RBP17.4■□□□□ 0.38
VPS35-210ENST00000568784 IBTKQ9P2D0 1353 aaPredicted RBP17.4■□□□□ 0.38
VPS35-210ENST00000568784 AK2P54819 239 aa17.4■□□□□ 0.38
VPS35-210ENST00000568784 AIMP1Q12904 312 aaKnown RBP17.4■□□□□ 0.38
VPS35-210ENST00000568784 PRR36Q9H6K5 1346 aa17.4■□□□□ 0.38
VPS35-210ENST00000568784 STX6O43752 255 aa17.39■□□□□ 0.38
VPS35-210ENST00000568784 HS1BP3Q53T59 392 aa17.39■□□□□ 0.38
VPS35-210ENST00000568784 IL25Q9H293 177 aa17.39■□□□□ 0.38
VPS35-210ENST00000568784 IFIT2P09913 472 aaKnown RBP17.39■□□□□ 0.37
VPS35-210ENST00000568784 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.39■□□□□ 0.37
VPS35-210ENST00000568784 DNM1Q05193 864 aaKnown RBP17.39■□□□□ 0.37
VPS35-210ENST00000568784 FAM173BQ6P4H8 233 aa17.39■□□□□ 0.37
VPS35-210ENST00000568784 ATP6V1DQ9Y5K8 247 aa17.39■□□□□ 0.37
VPS35-210ENST00000568784 GNAT3A8MTJ3 354 aa17.38■□□□□ 0.37
VPS35-210ENST00000568784 CCDC183Q5T5S1 534 aa17.38■□□□□ 0.37
VPS35-210ENST00000568784 SIL1Q9H173 461 aa17.38■□□□□ 0.37
VPS35-210ENST00000568784 RHPN1Q8TCX5 695 aa17.38■□□□□ 0.37
VPS35-210ENST00000568784 FBXW7Q969H0 707 aa17.38■□□□□ 0.37
VPS35-210ENST00000568784 ZNF500O60304 480 aaPredicted RBP17.38■□□□□ 0.37
VPS35-210ENST00000568784 PDLIM2Q96JY6 352 aa17.37■□□□□ 0.37
VPS35-210ENST00000568784 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.37■□□□□ 0.37
VPS35-210ENST00000568784 SYT1P21579 422 aa17.37■□□□□ 0.37
VPS35-210ENST00000568784 TEFQ10587 303 aa17.37■□□□□ 0.37
VPS35-210ENST00000568784 CKAP2LQ8IYA6 745 aa17.37■□□□□ 0.37
VPS35-210ENST00000568784 RBM33Q96EV2 1170 aaKnown RBP17.37■□□□□ 0.37
VPS35-210ENST00000568784 CLASRPQ8N2M8 674 aaKnown RBP17.37■□□□□ 0.37
VPS35-210ENST00000568784 IFT172Q9UG01 1749 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms