RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 REREQ9P2R6 1566 aa13.82□□□□□ -0.2
CUX1-218ENST00000560541 CYP2E1P05181 493 aaPredicted RBP13.82□□□□□ -0.2
CUX1-218ENST00000560541 PDE1AP54750 535 aa13.82□□□□□ -0.2
CUX1-218ENST00000560541 RTF1Q92541 710 aaKnown RBP13.82□□□□□ -0.2
CUX1-218ENST00000560541 NEK4P51957 841 aa13.82□□□□□ -0.2
CUX1-218ENST00000560541 CERS3Q8IU89 383 aa13.82□□□□□ -0.2
CUX1-218ENST00000560541 ZDHHC9Q9Y397 364 aa13.82□□□□□ -0.2
CUX1-218ENST00000560541 HMMRO75330 724 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 CDK11BP21127 795 aaKnown RBP13.81□□□□□ -0.2
CUX1-218ENST00000560541 CCDC173Q0VFZ6 552 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 MON2Q7Z3U7 1717 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 MAP7D2Q96T17 732 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 KIAA0232Q92628 1395 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 C3P01024 1663 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 SPATA31D1Q6ZQQ2 1576 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 GPT2Q8TD30 523 aa13.81□□□□□ -0.2
CUX1-218ENST00000560541 FOXD4L6Q3SYB3 417 aaPredicted RBP13.8□□□□□ -0.2
CUX1-218ENST00000560541 FOXD4L3Q6VB84 417 aaPredicted RBP13.8□□□□□ -0.2
CUX1-218ENST00000560541 RILPL2Q969X0 211 aa13.8□□□□□ -0.2
CUX1-218ENST00000560541 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
CUX1-218ENST00000560541 CRB1P82279 1406 aa13.8□□□□□ -0.2
CUX1-218ENST00000560541 TRIM6-TRIM34B2RNG4 842 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 DNTTIP2Q5QJE6 756 aaKnown RBP13.79□□□□□ -0.2
CUX1-218ENST00000560541 RBSNQ9H1K0 784 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 NSFL1CQ9UNZ2 370 aaKnown RBP13.79□□□□□ -0.2
CUX1-218ENST00000560541 PNMA6EA0A0J9YXQ4 647 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 FKBP5Q13451 457 aaPredicted RBP13.79□□□□□ -0.2
CUX1-218ENST00000560541 SLC26A8Q96RN1 970 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 PALD1Q9ULE6 856 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 ITSN1Q15811 1721 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 IGSF3O75054 1194 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 ZSCAN20P17040 1043 aaPredicted RBP13.79□□□□□ -0.2
CUX1-218ENST00000560541 PLPPR3Q6T4P5 718 aa13.79□□□□□ -0.2
CUX1-218ENST00000560541 ZBTB7CA1YPR0 619 aa13.78□□□□□ -0.2
CUX1-218ENST00000560541 GNAI2P04899 355 aa13.78□□□□□ -0.2
CUX1-218ENST00000560541 TMX3Q96JJ7 454 aa13.78□□□□□ -0.2
CUX1-218ENST00000560541 CWC22Q9HCG8 908 aaKnown RBP13.78□□□□□ -0.2
CUX1-218ENST00000560541 ANO2Q9NQ90 1003 aa13.78□□□□□ -0.2
CUX1-218ENST00000560541 PPP1R9BQ96SB3 815 aa13.78□□□□□ -0.2
CUX1-218ENST00000560541 RIMS1Q86UR5 1692 aaKnown RBP13.78□□□□□ -0.2
CUX1-218ENST00000560541 UQCRHLA0A096LP55 91 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 UQCRHP07919 91 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 CCT4P50991 539 aaKnown RBP13.77□□□□□ -0.2
CUX1-218ENST00000560541 ZNF445P59923 1031 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 STK31Q9BXU1 1019 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 PPP6R1Q9UPN7 881 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 OVOS2A0A0J9YW53 1432 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 OVOS2Q6IE36 1432 aa13.77□□□□□ -0.2
CUX1-218ENST00000560541 PEAK1Q9H792 1746 aa13.77□□□□□ -0.21
CUX1-218ENST00000560541 AKAP12Q02952 1782 aa13.77□□□□□ -0.21
CUX1-218ENST00000560541 SYCE3A1L190 88 aa13.77□□□□□ -0.21
CUX1-218ENST00000560541 CBX1P83916 185 aa13.77□□□□□ -0.21
CUX1-218ENST00000560541 NUTM2GQ5VZR2 741 aa13.77□□□□□ -0.21
CUX1-218ENST00000560541 UPF3BQ9BZI7 483 aaKnown RBP13.77□□□□□ -0.21
CUX1-218ENST00000560541 LRRCC1Q9C099 1032 aa13.77□□□□□ -0.21
CUX1-218ENST00000560541 NRKQ7Z2Y5 1582 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 IBTKQ9P2D0 1353 aaPredicted RBP13.76□□□□□ -0.21
CUX1-218ENST00000560541 BRD2P25440 801 aaKnown RBP13.76□□□□□ -0.21
CUX1-218ENST00000560541 AMPHP49418 695 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 FLIIQ13045 1269 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 TPRNQ4KMQ1 711 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 TMEM63CQ9P1W3 806 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 CGNQ9P2M7 1197 aaKnown RBP13.76□□□□□ -0.21
CUX1-218ENST00000560541 MX1P20591 662 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 ZSCAN30Q86W11 494 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 UNC5CLQ8IV45 518 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 EYA1Q99502 592 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 ESYT1Q9BSJ8 1104 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 IL1RAPL2Q9NP60 686 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 USP6P35125 1406 aa13.76□□□□□ -0.21
CUX1-218ENST00000560541 MSNP26038 577 aaKnown RBP13.75□□□□□ -0.21
CUX1-218ENST00000560541 HDGFP51858 240 aaKnown RBP13.75□□□□□ -0.21
CUX1-218ENST00000560541 UTP14CQ5TAP6 766 aaKnown RBP13.75□□□□□ -0.21
CUX1-218ENST00000560541 RNF214Q8ND24 703 aa13.75□□□□□ -0.21
CUX1-218ENST00000560541 MAP4K4O95819 1239 aaPredicted RBP13.75□□□□□ -0.21
CUX1-218ENST00000560541 LTV1Q96GA3 475 aaPredicted RBP13.75□□□□□ -0.21
CUX1-218ENST00000560541 OSBPL3Q9H4L5 887 aa13.75□□□□□ -0.21
CUX1-218ENST00000560541 LRRFIP2Q9Y608 721 aaKnown RBP13.75□□□□□ -0.21
CUX1-218ENST00000560541 TECPR2O15040 1411 aa13.75□□□□□ -0.21
CUX1-218ENST00000560541 OFD1O75665 1012 aa13.75□□□□□ -0.21
CUX1-218ENST00000560541 LTKP29376 864 aa13.74□□□□□ -0.21
CUX1-218ENST00000560541 NGDNQ8NEJ9 315 aaKnown RBP13.74□□□□□ -0.21
CUX1-218ENST00000560541 SIRT1Q96EB6 747 aa13.74□□□□□ -0.21
CUX1-218ENST00000560541 GDPD2Q9HCC8 539 aa13.74□□□□□ -0.21
CUX1-218ENST00000560541 AGLP35573 1532 aa13.74□□□□□ -0.21
CUX1-218ENST00000560541 PLEKHG3A1L390 1219 aa13.73□□□□□ -0.21
CUX1-218ENST00000560541 IL25Q9H293 177 aa13.73□□□□□ -0.21
CUX1-218ENST00000560541 CHMLP26374 656 aa13.73□□□□□ -0.21
CUX1-218ENST00000560541 NUTM1Q86Y26 1132 aa13.73□□□□□ -0.21
CUX1-218ENST00000560541 TMEM2Q9UHN6 1383 aa13.72□□□□□ -0.21
CUX1-218ENST00000560541 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.72□□□□□ -0.21
CUX1-218ENST00000560541 TNRQ92752 1358 aa13.72□□□□□ -0.21
CUX1-218ENST00000560541 SALL3Q9BXA9 1300 aa13.72□□□□□ -0.21
CUX1-218ENST00000560541 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.72□□□□□ -0.21
CUX1-218ENST00000560541 CEP170BQ9Y4F5 1589 aaPredicted RBP13.72□□□□□ -0.21
CUX1-218ENST00000560541 ARHGEF10O15013 1369 aa13.71□□□□□ -0.21
CUX1-218ENST00000560541 MCCP23508 829 aa13.71□□□□□ -0.21
CUX1-218ENST00000560541 GNAI3P08754 354 aa13.71□□□□□ -0.21
CUX1-218ENST00000560541 ATP8B2P98198 1209 aa13.71□□□□□ -0.21
CUX1-218ENST00000560541 CCDC30Q5VVM6 783 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms