RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 SLC5A1P13866 664 aa12.54□□□□□ -0.4
ACTN1-216ENST00000556083 NBPF1Q3BBV0 1214 aa12.54□□□□□ -0.4
ACTN1-216ENST00000556083 SPTY2D1Q68D10 685 aaPredicted RBP12.54□□□□□ -0.4
ACTN1-216ENST00000556083 STXBP4Q6ZWJ1 553 aa12.54□□□□□ -0.4
ACTN1-216ENST00000556083 CCDC112Q8NEF3 446 aa12.54□□□□□ -0.4
ACTN1-216ENST00000556083 TSG101Q99816 390 aa12.54□□□□□ -0.4
ACTN1-216ENST00000556083 CTCFLQ8NI51 663 aaPredicted RBP12.54□□□□□ -0.4
ACTN1-216ENST00000556083 SOS1Q07889 1333 aaPredicted RBP12.54□□□□□ -0.4
ACTN1-216ENST00000556083 ZSCAN12O43309 604 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 ZPR1O75312 459 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 BMP15O95972 392 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 ZNF76P36508 570 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 TMEM266Q2M3C6 531 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 MPHOSPH6Q99547 160 aaKnown RBP12.53□□□□□ -0.4
ACTN1-216ENST00000556083 DDX54Q8TDD1 881 aaKnown RBP12.53□□□□□ -0.4
ACTN1-216ENST00000556083 UPF3BQ9BZI7 483 aaKnown RBP12.53□□□□□ -0.4
ACTN1-216ENST00000556083 NAIPQ13075 1403 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 KLHL34Q8N239 644 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 ANO10Q9NW15 660 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 TTC21AQ8NDW8 1320 aa12.53□□□□□ -0.4
ACTN1-216ENST00000556083 METTL24Q5JXM2 366 aa12.52□□□□□ -0.4
ACTN1-216ENST00000556083 HMG20BQ9P0W2 317 aa12.52□□□□□ -0.4
ACTN1-216ENST00000556083 ADGRL1O94910 1474 aa12.52□□□□□ -0.4
ACTN1-216ENST00000556083 ATP2B1P20020 1258 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 CETN1Q12798 172 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 KANK3Q6NY19 840 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 CCDC148Q8NFR7 591 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 DDX12PQ92771 950 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 PHF8Q9UPP1 1060 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 DENND4BO75064 1496 aaPredicted RBP12.52□□□□□ -0.41
ACTN1-216ENST00000556083 MX1P20591 662 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 FKBP15Q5T1M5 1219 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 PLB1Q6P1J6 1458 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 CUL5Q93034 780 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 CDC5LQ99459 802 aaKnown RBP12.52□□□□□ -0.41
ACTN1-216ENST00000556083 SCAF11Q99590 1463 aaKnown RBP12.52□□□□□ -0.41
ACTN1-216ENST00000556083 ANKRD36BQ8N2N9 1353 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 IFIT5Q13325 482 aaKnown RBP12.52□□□□□ -0.41
ACTN1-216ENST00000556083 MAP3K11Q16584 847 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 MAP9Q49MG5 647 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 CADPS2Q86UW7 1296 aa12.52□□□□□ -0.41
ACTN1-216ENST00000556083 KIAA0754O94854 1291 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 KIF5BP33176 963 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 AMPD3Q01432 767 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 FKBP4Q02790 459 aaKnown RBP eCLIP12.51□□□□□ -0.41
ACTN1-216ENST00000556083 JAKMIP1Q96N16 626 aaKnown RBP12.51□□□□□ -0.41
ACTN1-216ENST00000556083 TANGO6Q9C0B7 1094 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 GOLGA6L9A6NEM1 432 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 EPB41L2O43491 1005 aaKnown RBP12.51□□□□□ -0.41
ACTN1-216ENST00000556083 NEFHP12036 1026 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 GBP2P32456 591 aaPredicted RBP12.51□□□□□ -0.41
ACTN1-216ENST00000556083 DUSP27Q5VZP5 1158 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 SAMD1Q6SPF0 538 aaPredicted RBP12.51□□□□□ -0.41
ACTN1-216ENST00000556083 ARHGAP45Q92619 1136 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 NUP133Q8WUM0 1156 aa12.51□□□□□ -0.41
ACTN1-216ENST00000556083 ARID3AQ99856 593 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 NKTRP30414 1462 aaKnown RBP12.5□□□□□ -0.41
ACTN1-216ENST00000556083 ATP2B2Q01814 1243 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 ZSCAN29Q8IWY8 852 aaPredicted RBP12.5□□□□□ -0.41
ACTN1-216ENST00000556083 UQCRFS1P1P0C7P4 283 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 RBM5P52756 815 aaKnown RBP eCLIP12.5□□□□□ -0.41
ACTN1-216ENST00000556083 NAPBQ9H115 298 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 ANKRD18BA2A2Z9 1011 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 WASLO00401 505 aaPredicted RBP12.5□□□□□ -0.41
ACTN1-216ENST00000556083 ZFYP08048 801 aaPredicted RBP12.5□□□□□ -0.41
ACTN1-216ENST00000556083 AXDND1Q5T1B0 1012 aaPredicted RBP12.5□□□□□ -0.41
ACTN1-216ENST00000556083 CCDC150Q8NCX0 1101 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 NUP160Q12769 1436 aa12.5□□□□□ -0.41
ACTN1-216ENST00000556083 BAG4O95429 457 aaKnown RBP12.49□□□□□ -0.41
ACTN1-216ENST00000556083 DDX11Q96FC9 970 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 RBM27Q9P2N5 1060 aaKnown RBP12.49□□□□□ -0.41
ACTN1-216ENST00000556083 TEX14Q8IWB6 1497 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 ZGPATQ8N5A5 531 aaKnown RBP12.49□□□□□ -0.41
ACTN1-216ENST00000556083 POTEB2H3BUK9 544 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 BAG3O95817 575 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 FOSBP53539 338 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 GSTO1P78417 241 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 TMTC2Q8N394 836 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 DNAAF4Q8WXU2 420 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 TSR2Q969E8 191 aaKnown RBP12.49□□□□□ -0.41
ACTN1-216ENST00000556083 EVI5LQ96CN4 794 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 INCENPQ9NQS7 918 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 DDX19AQ9NUU7 478 aaKnown RBP12.49□□□□□ -0.41
ACTN1-216ENST00000556083 CAMSAP2Q08AD1 1489 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 EIF5P55010 431 aaKnown RBP12.49□□□□□ -0.41
ACTN1-216ENST00000556083 SPA17Q15506 151 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 NBPF8Q3BBV2 869 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 CDCA7LQ96GN5 454 aa12.49□□□□□ -0.41
ACTN1-216ENST00000556083 THOC2Q8NI27 1593 aaKnown RBP12.48□□□□□ -0.41
ACTN1-216ENST00000556083 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.48□□□□□ -0.41
ACTN1-216ENST00000556083 FAM114A1Q8IWE2 563 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 IFNL2Q8IZJ0 200 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 ARHGAP29Q52LW3 1261 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 PPP1R42Q7Z4L9 355 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 MKNK2Q9HBH9 465 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 RALGAPBQ86X10 1494 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 USP5P45974 858 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 CCDC91Q7Z6B0 441 aa12.48□□□□□ -0.41
ACTN1-216ENST00000556083 ZNF444Q8N0Y2 327 aaPredicted RBP12.48□□□□□ -0.41
ACTN1-216ENST00000556083 CRACR2BQ8N4Y2 399 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms