RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 GNAT3A8MTJ3 354 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 CABP4P57796 275 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 DCTN1Q14203 1278 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 NKX1-1Q15270 411 aaPredicted RBP12.97□□□□□ -0.33
PSEN1-213ENST00000555386 CCDC125Q86Z20 511 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 PNISRQ8TF01 805 aaKnown RBP12.97□□□□□ -0.33
PSEN1-213ENST00000555386 DCAF5Q96JK2 942 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 TMOD3Q9NYL9 352 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 KDM6AO15550 1401 aaPredicted RBP12.97□□□□□ -0.33
PSEN1-213ENST00000555386 RNMTO43148 476 aaKnown RBP12.97□□□□□ -0.33
PSEN1-213ENST00000555386 EZH2Q15910 746 aaKnown RBP12.97□□□□□ -0.33
PSEN1-213ENST00000555386 MCM10Q7L590 875 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 PIGBQ92521 554 aa12.97□□□□□ -0.33
PSEN1-213ENST00000555386 RTF1Q92541 710 aaKnown RBP12.97□□□□□ -0.33
PSEN1-213ENST00000555386 BCL9O00512 1426 aa12.96□□□□□ -0.33
PSEN1-213ENST00000555386 KCNQ4P56696 695 aa12.96□□□□□ -0.34
PSEN1-213ENST00000555386 NFE2L2Q16236 605 aa12.96□□□□□ -0.34
PSEN1-213ENST00000555386 NFATC2IPQ8NCF5 419 aa12.96□□□□□ -0.34
PSEN1-213ENST00000555386 RUNDC1Q96C34 613 aa12.96□□□□□ -0.34
PSEN1-213ENST00000555386 RIPK4P57078 832 aa12.95□□□□□ -0.34
PSEN1-213ENST00000555386 SALL2Q9Y467 1007 aaPredicted RBP12.95□□□□□ -0.34
PSEN1-213ENST00000555386 PLEKHG2Q9H7P9 1386 aa12.94□□□□□ -0.34
PSEN1-213ENST00000555386 ZBED9Q6R2W3 1325 aa12.94□□□□□ -0.34
PSEN1-213ENST00000555386 ERVV-2B6SEH9 535 aa12.94□□□□□ -0.34
PSEN1-213ENST00000555386 TEFQ10587 303 aa12.94□□□□□ -0.34
PSEN1-213ENST00000555386 IL17REQ8NFR9 667 aa12.94□□□□□ -0.34
PSEN1-213ENST00000555386 THUMPD2Q9BTF0 503 aaKnown RBP12.94□□□□□ -0.34
PSEN1-213ENST00000555386 ASAP1Q9ULH1 1129 aa12.94□□□□□ -0.34
PSEN1-213ENST00000555386 APAF1O14727 1248 aa12.93□□□□□ -0.34
PSEN1-213ENST00000555386 TMPOP42166 694 aaKnown RBP12.93□□□□□ -0.34
PSEN1-213ENST00000555386 SLC39A6Q13433 755 aa12.92□□□□□ -0.34
PSEN1-213ENST00000555386 ERICH6BQ5W0A0 696 aa12.92□□□□□ -0.34
PSEN1-213ENST00000555386 CAMKK2Q96RR4 588 aa12.92□□□□□ -0.34
PSEN1-213ENST00000555386 RBM42Q9BTD8 480 aaKnown RBP12.92□□□□□ -0.34
PSEN1-213ENST00000555386 SLC52A2Q9HAB3 445 aa12.92□□□□□ -0.34
PSEN1-213ENST00000555386 PTCD1O75127 700 aaKnown RBP12.91□□□□□ -0.34
PSEN1-213ENST00000555386 TXNRD1Q16881 649 aa12.91□□□□□ -0.34
PSEN1-213ENST00000555386 ATG3Q9NT62 314 aa12.91□□□□□ -0.34
PSEN1-213ENST00000555386 MIS18AQ9NYP9 233 aa12.91□□□□□ -0.34
PSEN1-213ENST00000555386 PALLDQ8WX93 1383 aa12.9□□□□□ -0.34
PSEN1-213ENST00000555386 PLSCR1O15162 318 aa12.9□□□□□ -0.34
PSEN1-213ENST00000555386 PROM2Q8N271 834 aa12.9□□□□□ -0.34
PSEN1-213ENST00000555386 CCNL1Q9UK58 526 aaPredicted RBP12.9□□□□□ -0.34
PSEN1-213ENST00000555386 LAS1LQ9Y4W2 734 aaKnown RBP12.9□□□□□ -0.34
PSEN1-213ENST00000555386 BTBD11A6QL63 1104 aa12.89□□□□□ -0.35
PSEN1-213ENST00000555386 SMARCC1Q92922 1105 aaPredicted RBP12.89□□□□□ -0.35
PSEN1-213ENST00000555386 ADAMTS7Q9UKP4 1686 aa12.88□□□□□ -0.35
PSEN1-213ENST00000555386 LY75O60449 1722 aa12.88□□□□□ -0.35
PSEN1-213ENST00000555386 HTATSF1O43719 755 aaKnown RBP12.88□□□□□ -0.35
PSEN1-213ENST00000555386 LRRC4BQ9NT99 713 aa12.88□□□□□ -0.35
PSEN1-213ENST00000555386 SIPA1L3O60292 1781 aaPredicted RBP12.88□□□□□ -0.35
PSEN1-213ENST00000555386 NUP188Q5SRE5 1749 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 KCNQ3O43525 872 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 LMOD3Q0VAK6 560 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 TTC5Q8N0Z6 440 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 TRIM35Q9UPQ4 493 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 RREB1Q92766 1687 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 MRC1P22897 1456 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 RGPD3A6NKT7 1758 aaPredicted RBP12.87□□□□□ -0.35
PSEN1-213ENST00000555386 RGPD4Q7Z3J3 1758 aa12.87□□□□□ -0.35
PSEN1-213ENST00000555386 CEMIPQ8WUJ3 1361 aa12.86□□□□□ -0.35
PSEN1-213ENST00000555386 LOC102724428A0A0B4J2F2 783 aa12.86□□□□□ -0.35
PSEN1-213ENST00000555386 PSDA5PKW4 1024 aaPredicted RBP12.86□□□□□ -0.35
PSEN1-213ENST00000555386 ATP6V1AP38606 617 aa12.86□□□□□ -0.35
PSEN1-213ENST00000555386 SIK1P57059 783 aa12.86□□□□□ -0.35
PSEN1-213ENST00000555386 TAF7Q15545 349 aaPredicted RBP12.85□□□□□ -0.35
PSEN1-213ENST00000555386 R3HDM1Q15032 1099 aaKnown RBP12.85□□□□□ -0.35
PSEN1-213ENST00000555386 SLC27A3Q5K4L6 730 aa12.85□□□□□ -0.35
PSEN1-213ENST00000555386 NBPF14Q5TI25 921 aa12.85□□□□□ -0.35
PSEN1-213ENST00000555386 ANO8Q9HCE9 1232 aaPredicted RBP12.85□□□□□ -0.35
PSEN1-213ENST00000555386 TAF1LQ8IZX4 1826 aa12.85□□□□□ -0.35
PSEN1-213ENST00000555386 C5P01031 1676 aa12.84□□□□□ -0.35
PSEN1-213ENST00000555386 ITPK1Q13572 414 aa12.84□□□□□ -0.35
PSEN1-213ENST00000555386 ZNF790Q6PG37 636 aa12.84□□□□□ -0.35
PSEN1-213ENST00000555386 SLC4A9Q96Q91 983 aa12.84□□□□□ -0.35
PSEN1-213ENST00000555386 TSPYL4Q9UJ04 414 aa12.84□□□□□ -0.35
PSEN1-213ENST00000555386 PAPPAQ13219 1627 aa12.83□□□□□ -0.36
PSEN1-213ENST00000555386 SMIM5Q71RC9 77 aa12.83□□□□□ -0.36
PSEN1-213ENST00000555386 ZNF496Q96IT1 587 aaPredicted RBP12.83□□□□□ -0.36
PSEN1-213ENST00000555386 STK32BQ9NY57 414 aa12.83□□□□□ -0.36
PSEN1-213ENST00000555386 ZNF827Q17R98 1081 aa12.82□□□□□ -0.36
PSEN1-213ENST00000555386 LINC00116Q8NCU8 138 aa12.82□□□□□ -0.36
PSEN1-213ENST00000555386 DNAJC10Q8IXB1 793 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 AK7Q96M32 723 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 FMNL2Q96PY5 1086 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 TFCP2L1Q9NZI6 479 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 UBR2Q8IWV8 1755 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 KCPQ6ZWJ8 1503 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 SRCAPQ6ZRS2 3230 aa12.81□□□□□ -0.36
PSEN1-213ENST00000555386 KDM3BQ7LBC6 1761 aa12.8□□□□□ -0.36
PSEN1-213ENST00000555386 PHF14O94880 888 aa12.8□□□□□ -0.36
PSEN1-213ENST00000555386 WWC1Q8IX03 1113 aa12.8□□□□□ -0.36
PSEN1-213ENST00000555386 MYH14Q7Z406 1995 aaKnown RBP12.8□□□□□ -0.36
PSEN1-213ENST00000555386 C4BP0C0L5 1744 aa12.8□□□□□ -0.36
PSEN1-213ENST00000555386 TJP1Q07157 1748 aa12.8□□□□□ -0.36
PSEN1-213ENST00000555386 TUBGCP6Q96RT7 1819 aa12.8□□□□□ -0.36
PSEN1-213ENST00000555386 PRAMEF22A3QJZ6 481 aa12.79□□□□□ -0.36
PSEN1-213ENST00000555386 SLC15A2Q16348 729 aa12.79□□□□□ -0.36
PSEN1-213ENST00000555386 TSHZ2Q9NRE2 1034 aa12.79□□□□□ -0.36
PSEN1-213ENST00000555386 GNPATO15228 680 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms