RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 EID1Q9Y6B2 187 aa11.57□□□□□ -0.56
SYNE2-213ENST00000554805 CLTCQ00610 1675 aaKnown RBP11.57□□□□□ -0.56
SYNE2-213ENST00000554805 ZNF445P59923 1031 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 LRRFIP2Q9Y608 721 aaKnown RBP11.56□□□□□ -0.56
SYNE2-213ENST00000554805 EIF2S2P20042 333 aaKnown RBP11.56□□□□□ -0.56
SYNE2-213ENST00000554805 LMOD2Q6P5Q4 547 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 PPP1R9BQ96SB3 815 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 PNMA6EA0A0J9YXQ4 647 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 NLRP6P59044 892 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 NUTM1Q86Y26 1132 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 GPT2Q8TD30 523 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 ZDHHC9Q9Y397 364 aa11.56□□□□□ -0.56
SYNE2-213ENST00000554805 CYP2E1P05181 493 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-213ENST00000554805 UBTFL1P0CB47 393 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-213ENST00000554805 DLC1Q96QB1 1528 aa11.55□□□□□ -0.56
SYNE2-213ENST00000554805 SURF6O75683 361 aaKnown RBP11.55□□□□□ -0.56
SYNE2-213ENST00000554805 MCM2P49736 904 aa11.55□□□□□ -0.56
SYNE2-213ENST00000554805 EYA1Q99502 592 aa11.55□□□□□ -0.56
SYNE2-213ENST00000554805 PALD1Q9ULE6 856 aa11.55□□□□□ -0.56
SYNE2-213ENST00000554805 OS9Q13438 667 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-213ENST00000554805 GDPD2Q9HCC8 539 aa11.55□□□□□ -0.56
SYNE2-213ENST00000554805 ROBO2Q9HCK4 1378 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 TMEM63CQ9P1W3 806 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 R3HCC1Q9Y3T6 440 aaKnown RBP11.54□□□□□ -0.56
SYNE2-213ENST00000554805 AK9Q5TCS8 1911 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 RGS12O14924 1447 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 MBD3O95983 291 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 LTKP29376 864 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 ATP8B2P98198 1209 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 CHMLP26374 656 aa11.54□□□□□ -0.56
SYNE2-213ENST00000554805 NSFL1CQ9UNZ2 370 aaKnown RBP11.54□□□□□ -0.56
SYNE2-213ENST00000554805 GNAT3A8MTJ3 354 aa11.53□□□□□ -0.56
SYNE2-213ENST00000554805 TPM2P07951 284 aa11.53□□□□□ -0.56
SYNE2-213ENST00000554805 HDGFL1Q5TGJ6 251 aa11.53□□□□□ -0.56
SYNE2-213ENST00000554805 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-213ENST00000554805 SYAP1Q96A49 352 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-213ENST00000554805 SIRT1Q96EB6 747 aa11.53□□□□□ -0.56
SYNE2-213ENST00000554805 LARP6Q9BRS8 491 aaKnown RBP11.53□□□□□ -0.56
SYNE2-213ENST00000554805 OSBPL3Q9H4L5 887 aa11.53□□□□□ -0.56
SYNE2-213ENST00000554805 RICTORQ6R327 1708 aa11.53□□□□□ -0.56
SYNE2-213ENST00000554805 N4BP2Q86UW6 1770 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-213ENST00000554805 PLEKHG3A1L390 1219 aa11.52□□□□□ -0.56
SYNE2-213ENST00000554805 XPCQ01831 940 aaPredicted RBP11.52□□□□□ -0.56
SYNE2-213ENST00000554805 MPNDQ8N594 471 aa11.52□□□□□ -0.56
SYNE2-213ENST00000554805 RRP9O43818 475 aaKnown RBP11.52□□□□□ -0.57
SYNE2-213ENST00000554805 LRSAM1Q6UWE0 723 aa11.52□□□□□ -0.57
SYNE2-213ENST00000554805 TUBGCP6Q96RT7 1819 aa11.52□□□□□ -0.57
SYNE2-213ENST00000554805 UNC5CLQ8IV45 518 aa11.52□□□□□ -0.57
SYNE2-213ENST00000554805 VSIG10Q8N0Z9 540 aa11.52□□□□□ -0.57
SYNE2-213ENST00000554805 USHBP1Q8N6Y0 703 aa11.52□□□□□ -0.57
SYNE2-213ENST00000554805 IBTKQ9P2D0 1353 aaPredicted RBP11.52□□□□□ -0.57
SYNE2-213ENST00000554805 PLCB2Q00722 1185 aa11.51□□□□□ -0.57
SYNE2-213ENST00000554805 TNRQ92752 1358 aa11.51□□□□□ -0.57
SYNE2-213ENST00000554805 SRCIN1Q9C0H9 1055 aa11.51□□□□□ -0.57
SYNE2-213ENST00000554805 AMOTL2Q9Y2J4 779 aa11.51□□□□□ -0.57
SYNE2-213ENST00000554805 CRB1P82279 1406 aa11.51□□□□□ -0.57
SYNE2-213ENST00000554805 RBM10P98175 930 aaKnown RBP11.51□□□□□ -0.57
SYNE2-213ENST00000554805 TSPY26PQ9H489 355 aa11.51□□□□□ -0.57
SYNE2-213ENST00000554805 SRGAP3O43295 1099 aa11.5□□□□□ -0.57
SYNE2-213ENST00000554805 DNTTIP2Q5QJE6 756 aaKnown RBP11.5□□□□□ -0.57
SYNE2-213ENST00000554805 PPP1R42Q7Z4L9 355 aa11.5□□□□□ -0.57
SYNE2-213ENST00000554805 PHAXQ9H814 394 aaKnown RBP11.5□□□□□ -0.57
SYNE2-213ENST00000554805 FLT4P35916 1363 aa11.5□□□□□ -0.57
SYNE2-213ENST00000554805 KNDC1Q76NI1 1749 aa11.5□□□□□ -0.57
SYNE2-213ENST00000554805 OFD1O75665 1012 aa11.5□□□□□ -0.57
SYNE2-213ENST00000554805 BRD1O95696 1058 aa11.5□□□□□ -0.57
SYNE2-213ENST00000554805 TAF7Q15545 349 aaPredicted RBP11.5□□□□□ -0.57
SYNE2-213ENST00000554805 ABTB2Q8N961 1025 aa11.49□□□□□ -0.57
SYNE2-213ENST00000554805 CCDC39Q9UFE4 941 aa11.49□□□□□ -0.57
SYNE2-213ENST00000554805 USP6P35125 1406 aa11.49□□□□□ -0.57
SYNE2-213ENST00000554805 ARHGEF10O15013 1369 aa11.49□□□□□ -0.57
SYNE2-213ENST00000554805 WDR33Q9C0J8 1336 aaKnown RBP11.49□□□□□ -0.57
SYNE2-213ENST00000554805 ANAPC15P60006 121 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 ARID3AQ99856 593 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 USP44Q9H0E7 712 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 DNAJC5Q9H3Z4 198 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 FAM13BQ9NYF5 915 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 DLG5Q8TDM6 1919 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 DTNBO60941 627 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 ANXA1P04083 346 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 CWC27Q6UX04 472 aaKnown RBP11.48□□□□□ -0.57
SYNE2-213ENST00000554805 TMEM2Q9UHN6 1383 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 GADD45BO75293 160 aaPredicted RBP11.48□□□□□ -0.57
SYNE2-213ENST00000554805 PHF14O94880 888 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 KCNJ4P48050 445 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 IL17REQ8NFR9 667 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 SBNO1A3KN83 1393 aa11.48□□□□□ -0.57
SYNE2-213ENST00000554805 TTC21AQ8NDW8 1320 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 USP48Q86UV5 1035 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 RHPN1Q8TCX5 695 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 DIAPH3Q9NSV4 1193 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 NOL7Q9UMY1 257 aaKnown RBP11.47□□□□□ -0.57
SYNE2-213ENST00000554805 SMC3Q9UQE7 1217 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 CUL4AQ13619 759 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 CNTROBQ8N137 903 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 SPG7Q9UQ90 795 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 FIBPO43427 364 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 HSPA2P54652 639 aa11.47□□□□□ -0.57
SYNE2-213ENST00000554805 DDX54Q8TDD1 881 aaKnown RBP11.47□□□□□ -0.57
SYNE2-213ENST00000554805 INTS4Q96HW7 963 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms