RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RIPK4P57078 832 aa20.14■□□□□ 0.81
LSM1-203ENST00000520755 NEUROD2Q15784 382 aa20.14■□□□□ 0.81
LSM1-203ENST00000520755 EN1Q05925 392 aaPredicted RBP20.13■□□□□ 0.81
LSM1-203ENST00000520755 NCBP3Q53F19 620 aaKnown RBP20.13■□□□□ 0.81
LSM1-203ENST00000520755 IL17REQ8NFR9 667 aa20.13■□□□□ 0.81
LSM1-203ENST00000520755 PIGBQ92521 554 aa20.13■□□□□ 0.81
LSM1-203ENST00000520755 SALL2Q9Y467 1007 aaPredicted RBP20.13■□□□□ 0.81
LSM1-203ENST00000520755 DCTN1Q14203 1278 aa20.12■□□□□ 0.81
LSM1-203ENST00000520755 CCDC27Q2M243 656 aa20.12■□□□□ 0.81
LSM1-203ENST00000520755 MCM10Q7L590 875 aa20.12■□□□□ 0.81
LSM1-203ENST00000520755 NFATC2IPQ8NCF5 419 aa20.12■□□□□ 0.81
LSM1-203ENST00000520755 LY75O60449 1722 aa20.12■□□□□ 0.81
LSM1-203ENST00000520755 CEMIPQ8WUJ3 1361 aa20.11■□□□□ 0.81
LSM1-203ENST00000520755 ZBED9Q6R2W3 1325 aa20.11■□□□□ 0.81
LSM1-203ENST00000520755 HTATSF1O43719 755 aaKnown RBP20.11■□□□□ 0.81
LSM1-203ENST00000520755 SLC52A2Q9HAB3 445 aa20.11■□□□□ 0.81
LSM1-203ENST00000520755 UBR2Q8IWV8 1755 aa20.11■□□□□ 0.81
LSM1-203ENST00000520755 TEFQ10587 303 aa20.1■□□□□ 0.81
LSM1-203ENST00000520755 THUMPD2Q9BTF0 503 aaKnown RBP20.1■□□□□ 0.81
LSM1-203ENST00000520755 RREB1Q92766 1687 aa20.1■□□□□ 0.81
LSM1-203ENST00000520755 EZH2Q15910 746 aaKnown RBP20.09■□□□□ 0.81
LSM1-203ENST00000520755 WWC1Q8IX03 1113 aa20.09■□□□□ 0.81
LSM1-203ENST00000520755 NGEFQ8N5V2 710 aa20.09■□□□□ 0.81
LSM1-203ENST00000520755 PLSCR1O15162 318 aa20.08■□□□□ 0.81
LSM1-203ENST00000520755 LMOD3Q0VAK6 560 aa20.08■□□□□ 0.81
LSM1-203ENST00000520755 CAMKK2Q96RR4 588 aa20.07■□□□□ 0.8
LSM1-203ENST00000520755 ASAP1Q9ULH1 1129 aa20.07■□□□□ 0.8
LSM1-203ENST00000520755 NUP188Q5SRE5 1749 aa20.07■□□□□ 0.8
LSM1-203ENST00000520755 PALLDQ8WX93 1383 aa20.07■□□□□ 0.8
LSM1-203ENST00000520755 ATG3Q9NT62 314 aa20.06■□□□□ 0.8
LSM1-203ENST00000520755 SMARCC1Q92922 1105 aaPredicted RBP20.05■□□□□ 0.8
LSM1-203ENST00000520755 TXNRD1Q16881 649 aa20.04■□□□□ 0.8
LSM1-203ENST00000520755 C5P01031 1676 aa20.03■□□□□ 0.8
LSM1-203ENST00000520755 SLC39A6Q13433 755 aa20.03■□□□□ 0.8
LSM1-203ENST00000520755 SPINK5Q9NQ38 1064 aaPredicted RBP20.03■□□□□ 0.8
LSM1-203ENST00000520755 TAF1LQ8IZX4 1826 aa20.02■□□□□ 0.8
LSM1-203ENST00000520755 BTBD11A6QL63 1104 aa20.02■□□□□ 0.8
LSM1-203ENST00000520755 PROM2Q8N271 834 aa20.02■□□□□ 0.8
LSM1-203ENST00000520755 KCNQ4P56696 695 aa20.01■□□□□ 0.79
LSM1-203ENST00000520755 RBM42Q9BTD8 480 aaKnown RBP20.01■□□□□ 0.79
LSM1-203ENST00000520755 CCNL1Q9UK58 526 aaPredicted RBP20.01■□□□□ 0.79
LSM1-203ENST00000520755 PTCD1O75127 700 aaKnown RBP20■□□□□ 0.79
LSM1-203ENST00000520755 TAF7Q15545 349 aaPredicted RBP20■□□□□ 0.79
LSM1-203ENST00000520755 WDR63Q8IWG1 891 aa20■□□□□ 0.79
LSM1-203ENST00000520755 TTC5Q8N0Z6 440 aa20■□□□□ 0.79
LSM1-203ENST00000520755 CDCA7LQ96GN5 454 aa20■□□□□ 0.79
LSM1-203ENST00000520755 LAMB4A4D0S4 1761 aa20■□□□□ 0.79
LSM1-203ENST00000520755 IL16Q14005 1332 aa20■□□□□ 0.79
LSM1-203ENST00000520755 KCPQ6ZWJ8 1503 aa19.99■□□□□ 0.79
LSM1-203ENST00000520755 SLC27A3Q5K4L6 730 aa19.99■□□□□ 0.79
LSM1-203ENST00000520755 LRRC4BQ9NT99 713 aa19.99■□□□□ 0.79
LSM1-203ENST00000520755 MIS18AQ9NYP9 233 aa19.99■□□□□ 0.79
LSM1-203ENST00000520755 ZNF831Q5JPB2 1677 aa19.98■□□□□ 0.79
LSM1-203ENST00000520755 LOC102724428A0A0B4J2F2 783 aa19.98■□□□□ 0.79
LSM1-203ENST00000520755 ZNF853P0CG23 659 aa19.98■□□□□ 0.79
LSM1-203ENST00000520755 SIK1P57059 783 aa19.98■□□□□ 0.79
LSM1-203ENST00000520755 ZNF790Q6PG37 636 aa19.98■□□□□ 0.79
LSM1-203ENST00000520755 TJP1Q07157 1748 aa19.98■□□□□ 0.79
LSM1-203ENST00000520755 CICQ96RK0 1608 aaPredicted RBP19.98■□□□□ 0.79
LSM1-203ENST00000520755 KCNQ3O43525 872 aa19.97■□□□□ 0.79
LSM1-203ENST00000520755 GOLGA2Q08379 1002 aa19.97■□□□□ 0.79
LSM1-203ENST00000520755 LAS1LQ9Y4W2 734 aaKnown RBP19.97■□□□□ 0.79
LSM1-203ENST00000520755 COL5A3P25940 1745 aaPredicted RBP19.96■□□□□ 0.79
LSM1-203ENST00000520755 ATP6V1AP38606 617 aa19.96■□□□□ 0.79
LSM1-203ENST00000520755 SLFN5Q08AF3 891 aa19.96■□□□□ 0.79
LSM1-203ENST00000520755 IFT57Q9NWB7 429 aa19.96■□□□□ 0.79
LSM1-203ENST00000520755 TRMT2AQ8IZ69 625 aaKnown RBP19.95■□□□□ 0.78
LSM1-203ENST00000520755 SLC4A9Q96Q91 983 aa19.95■□□□□ 0.78
LSM1-203ENST00000520755 TSPYL4Q9UJ04 414 aa19.95■□□□□ 0.78
LSM1-203ENST00000520755 FANCIQ9NVI1 1328 aa19.95■□□□□ 0.78
LSM1-203ENST00000520755 C4BP0C0L5 1744 aa19.94■□□□□ 0.78
LSM1-203ENST00000520755 CALD1Q05682 793 aaKnown RBP19.94■□□□□ 0.78
LSM1-203ENST00000520755 TSR2Q969E8 191 aaKnown RBP19.94■□□□□ 0.78
LSM1-203ENST00000520755 ZNF496Q96IT1 587 aaPredicted RBP19.94■□□□□ 0.78
LSM1-203ENST00000520755 CFAP44Q96MT7 982 aa19.94■□□□□ 0.78
LSM1-203ENST00000520755 MBIPQ9NS73 344 aa19.94■□□□□ 0.78
LSM1-203ENST00000520755 CHL1O00533 1208 aa19.93■□□□□ 0.78
LSM1-203ENST00000520755 ITPK1Q13572 414 aa19.93■□□□□ 0.78
LSM1-203ENST00000520755 FMNL2Q96PY5 1086 aa19.93■□□□□ 0.78
LSM1-203ENST00000520755 TUBGCP6Q96RT7 1819 aa19.92■□□□□ 0.78
LSM1-203ENST00000520755 E9PSI1 815 aa19.92■□□□□ 0.78
LSM1-203ENST00000520755 GNAI1P63096 354 aa19.92■□□□□ 0.78
LSM1-203ENST00000520755 NBPF14Q5TI25 921 aa19.92■□□□□ 0.78
LSM1-203ENST00000520755 DUSP27Q5VZP5 1158 aa19.92■□□□□ 0.78
LSM1-203ENST00000520755 LINC00116Q8NCU8 138 aa19.91■□□□□ 0.78
LSM1-203ENST00000520755 ANO8Q9HCE9 1232 aaPredicted RBP19.91■□□□□ 0.78
LSM1-203ENST00000520755 HEG1Q9ULI3 1381 aa19.91■□□□□ 0.78
LSM1-203ENST00000520755 DNAJC10Q8IXB1 793 aa19.9■□□□□ 0.78
LSM1-203ENST00000520755 BABAM1Q9NWV8 329 aa19.9■□□□□ 0.78
LSM1-203ENST00000520755 STK32BQ9NY57 414 aa19.9■□□□□ 0.78
LSM1-203ENST00000520755 ZNF827Q17R98 1081 aa19.89■□□□□ 0.77
LSM1-203ENST00000520755 VSIG10Q8N0Z9 540 aa19.89■□□□□ 0.77
LSM1-203ENST00000520755 MYH14Q7Z406 1995 aaKnown RBP19.88■□□□□ 0.77
LSM1-203ENST00000520755 EIF4A1P60842 406 aaKnown RBP19.88■□□□□ 0.77
LSM1-203ENST00000520755 MYH16Q9H6N6 1097 aa19.88■□□□□ 0.77
LSM1-203ENST00000520755 UBR3Q6ZT12 1888 aa19.88■□□□□ 0.77
LSM1-203ENST00000520755 QSER1Q2KHR3 1735 aa19.88■□□□□ 0.77
LSM1-203ENST00000520755 HMGB2P26583 209 aaKnown RBP19.87■□□□□ 0.77
LSM1-203ENST00000520755 R3HDM1Q15032 1099 aaKnown RBP19.87■□□□□ 0.77
LSM1-203ENST00000520755 SLC15A2Q16348 729 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms