RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	GAS2L2	Q8NHY3	880 aa		10.28	□□□□□ -0.76
LIMCH1-222	ENST00000515847	KAT6B	Q8WYB5	2073 aa		10.28	□□□□□ -0.76
LIMCH1-222	ENST00000515847	BTAF1	O14981	1849 aa		10.28	□□□□□ -0.76
LIMCH1-222	ENST00000515847	KCNQ2	O43526	872 aa		10.27	□□□□□ -0.77
LIMCH1-222	ENST00000515847	FCHSD2	O94868	740 aa		10.27	□□□□□ -0.77
LIMCH1-222	ENST00000515847	BAG6	P46379	1132 aa		10.27	□□□□□ -0.77
LIMCH1-222	ENST00000515847	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.27	□□□□□ -0.77
LIMCH1-222	ENST00000515847	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	RGPD4	Q7Z3J3	1758 aa		10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	APBA3	O96018	575 aa		10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	CLCN6	P51797	869 aa		10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	EN1	Q05925	392 aa	Predicted RBP	10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	ZNF579	Q8NAF0	562 aa	Known RBP	10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	MRS2	Q9HD23	443 aa		10.26	□□□□□ -0.77
LIMCH1-222	ENST00000515847	RREB1	Q92766	1687 aa		10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	CCER2	I3L3R5	266 aa		10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	PHKG2	P15735	406 aa		10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	LMOD3	Q0VAK6	560 aa		10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	IFNL2	Q8IZJ0	200 aa		10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	SYTL4	Q96C24	671 aa	Predicted RBP	10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	ITGB4	P16144	1822 aa		10.25	□□□□□ -0.77
LIMCH1-222	ENST00000515847	PRIM1	P49642	420 aa	Known RBP	10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	MNX1	P50219	401 aa	Predicted RBP	10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	NKX1-1	Q15270	411 aa	Predicted RBP	10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	EZH2	Q15910	746 aa	Known RBP	10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	CAMKK2	Q96RR4	588 aa		10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	RSPH6A	Q9H0K4	717 aa		10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	NUP188	Q5SRE5	1749 aa		10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	KDM6A	O15550	1401 aa	Predicted RBP	10.24	□□□□□ -0.77
LIMCH1-222	ENST00000515847	PRKAR2B	P31323	418 aa		10.23	□□□□□ -0.77
LIMCH1-222	ENST00000515847	AKAP4	Q5JQC9	854 aa		10.23	□□□□□ -0.77
LIMCH1-222	ENST00000515847	RTF1	Q92541	710 aa	Known RBP	10.23	□□□□□ -0.77
LIMCH1-222	ENST00000515847	SCN11A	Q9UI33	1791 aa		10.22	□□□□□ -0.77
LIMCH1-222	ENST00000515847	VIRMA	Q69YN4	1812 aa	Known RBP	10.22	□□□□□ -0.77
LIMCH1-222	ENST00000515847	MTHFSD	Q2M296	383 aa	Known RBP	10.22	□□□□□ -0.77
LIMCH1-222	ENST00000515847	DCAF5	Q96JK2	942 aa		10.22	□□□□□ -0.77
LIMCH1-222	ENST00000515847	MAP3K5	Q99683	1374 aa		10.22	□□□□□ -0.77
LIMCH1-222	ENST00000515847	PLSCR1	O15162	318 aa		10.21	□□□□□ -0.77
LIMCH1-222	ENST00000515847	POTEI	P0CG38	1075 aa		10.21	□□□□□ -0.77
LIMCH1-222	ENST00000515847	MPRIP	Q6WCQ1	1025 aa		10.21	□□□□□ -0.77
LIMCH1-222	ENST00000515847	PHACTR3	Q96KR7	559 aa		10.21	□□□□□ -0.77
LIMCH1-222	ENST00000515847	ADAMTS7	Q9UKP4	1686 aa		10.21	□□□□□ -0.78
LIMCH1-222	ENST00000515847	HTATSF1	O43719	755 aa	Known RBP	10.2	□□□□□ -0.78
LIMCH1-222	ENST00000515847	LY75	O60449	1722 aa		10.2	□□□□□ -0.78
LIMCH1-222	ENST00000515847	MRC1	P22897	1456 aa		10.2	□□□□□ -0.78
LIMCH1-222	ENST00000515847	CALD1	Q05682	793 aa	Known RBP	10.2	□□□□□ -0.78
LIMCH1-222	ENST00000515847	NGEF	Q8N5V2	710 aa		10.2	□□□□□ -0.78
LIMCH1-222	ENST00000515847	RUNDC1	Q96C34	613 aa		10.2	□□□□□ -0.78
LIMCH1-222	ENST00000515847	GNAT3	A8MTJ3	354 aa		10.19	□□□□□ -0.78
LIMCH1-222	ENST00000515847	PIGB	Q92521	554 aa		10.19	□□□□□ -0.78
LIMCH1-222	ENST00000515847	TMOD3	Q9NYL9	352 aa		10.19	□□□□□ -0.78
LIMCH1-222	ENST00000515847	PAPPA	Q13219	1627 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	ERVV-2	B6SEH9	535 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	TEF	Q10587	303 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	TXNRD1	Q16881	649 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	CCDC184	Q52MB2	194 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	SMARCC1	Q92922	1105 aa	Predicted RBP	10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	PLEKHF1	Q96S99	279 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	LGR6	Q9HBX8	967 aa		10.18	□□□□□ -0.78
LIMCH1-222	ENST00000515847	DLG5	Q8TDM6	1919 aa		10.17	□□□□□ -0.78
LIMCH1-222	ENST00000515847	PALLD	Q8WX93	1383 aa		10.17	□□□□□ -0.78
LIMCH1-222	ENST00000515847	RNMT	O43148	476 aa	Known RBP	10.17	□□□□□ -0.78
LIMCH1-222	ENST00000515847	CABP4	P57796	275 aa		10.17	□□□□□ -0.78
LIMCH1-222	ENST00000515847	NFE2L2	Q16236	605 aa		10.17	□□□□□ -0.78
LIMCH1-222	ENST00000515847	KCNQ4	P56696	695 aa		10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	LHX8	Q68G74	356 aa		10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	CCDC146	Q8IYE0	955 aa		10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	PNISR	Q8TF01	805 aa	Known RBP	10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	LRRC4B	Q9NT99	713 aa		10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	ASAP1	Q9ULH1	1129 aa		10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	SIPA1L3	O60292	1781 aa	Predicted RBP	10.16	□□□□□ -0.78
LIMCH1-222	ENST00000515847	C5	P01031	1676 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	TTC5	Q8N0Z6	440 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	NFATC2IP	Q8NCF5	419 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	IL17RE	Q8NFR9	667 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	DCBLD2	Q96PD2	775 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	SLC52A2	Q9HAB3	445 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	ATG3	Q9NT62	314 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	CCNL1	Q9UK58	526 aa	Predicted RBP	10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	ADAMTS8	Q9UP79	889 aa		10.15	□□□□□ -0.78
LIMCH1-222	ENST00000515847	CEMIP	Q8WUJ3	1361 aa		10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	TAF1L	Q8IZX4	1826 aa		10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	PSD	A5PKW4	1024 aa	Predicted RBP	10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	R3HDM1	Q15032	1099 aa	Known RBP	10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	SLC27A3	Q5K4L6	730 aa		10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	MCM10	Q7L590	875 aa		10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	TUBGCP6	Q96RT7	1819 aa		10.14	□□□□□ -0.79
LIMCH1-222	ENST00000515847	GALR2	O43603	387 aa	Predicted RBP	10.13	□□□□□ -0.79
LIMCH1-222	ENST00000515847	DCTN1	Q14203	1278 aa		10.13	□□□□□ -0.79
LIMCH1-222	ENST00000515847	NBPF14	Q5TI25	921 aa		10.13	□□□□□ -0.79
LIMCH1-222	ENST00000515847	FAM9B	Q8IZU0	186 aa		10.13	□□□□□ -0.79
LIMCH1-222	ENST00000515847	PHF12	Q96QT6	1004 aa		10.13	□□□□□ -0.79
LIMCH1-222	ENST00000515847	SRCAP	Q6ZRS2	3230 aa		10.13	□□□□□ -0.79
LIMCH1-222	ENST00000515847	UBR2	Q8IWV8	1755 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	LOC102724428	A0A0B4J2F2	783 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	TMPO	P42166	694 aa	Known RBP	10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	SIK1	P57059	783 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	RIPK4	P57078	832 aa		10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms