RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SLC52A2Q9HAB3 445 aa12.06□□□□□ -0.48
NUP54-207ENST00000508583 MRC1P22897 1456 aa12.06□□□□□ -0.48
NUP54-207ENST00000508583 VIRMAQ69YN4 1812 aaKnown RBP12.06□□□□□ -0.48
NUP54-207ENST00000508583 TEFQ10587 303 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 NFE2L2Q16236 605 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 TXNRD1Q16881 649 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 PIGBQ92521 554 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 ADAMTS7Q9UKP4 1686 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 LY75O60449 1722 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 PALLDQ8WX93 1383 aa12.05□□□□□ -0.48
NUP54-207ENST00000508583 PPP4R3CPQ6ZMV5 832 aa12.04□□□□□ -0.48
NUP54-207ENST00000508583 ADAMTS8Q9UP79 889 aa12.04□□□□□ -0.48
NUP54-207ENST00000508583 NFATC2IPQ8NCF5 419 aa12.03□□□□□ -0.48
NUP54-207ENST00000508583 CCNL1Q9UK58 526 aaPredicted RBP12.03□□□□□ -0.48
NUP54-207ENST00000508583 CEMIPQ8WUJ3 1361 aa12.03□□□□□ -0.48
NUP54-207ENST00000508583 PAPPAQ13219 1627 aa12.02□□□□□ -0.49
NUP54-207ENST00000508583 CCER2I3L3R5 266 aa12.02□□□□□ -0.49
NUP54-207ENST00000508583 TTC5Q8N0Z6 440 aa12.02□□□□□ -0.49
NUP54-207ENST00000508583 PNISRQ8TF01 805 aaKnown RBP12.02□□□□□ -0.49
NUP54-207ENST00000508583 LGR6Q9HBX8 967 aa12.02□□□□□ -0.49
NUP54-207ENST00000508583 RIPK4P57078 832 aa12.01□□□□□ -0.49
NUP54-207ENST00000508583 CCDC146Q8IYE0 955 aa12.01□□□□□ -0.49
NUP54-207ENST00000508583 PROM2Q8N271 834 aa12.01□□□□□ -0.49
NUP54-207ENST00000508583 ATG3Q9NT62 314 aa12.01□□□□□ -0.49
NUP54-207ENST00000508583 STK32BQ9NY57 414 aa12.01□□□□□ -0.49
NUP54-207ENST00000508583 DLG5Q8TDM6 1919 aa12□□□□□ -0.49
NUP54-207ENST00000508583 LOC102724428A0A0B4J2F2 783 aa12□□□□□ -0.49
NUP54-207ENST00000508583 TMPOP42166 694 aaKnown RBP12□□□□□ -0.49
NUP54-207ENST00000508583 SIK1P57059 783 aa12□□□□□ -0.49
NUP54-207ENST00000508583 CALD1Q05682 793 aaKnown RBP12□□□□□ -0.49
NUP54-207ENST00000508583 IL17REQ8NFR9 667 aa12□□□□□ -0.49
NUP54-207ENST00000508583 ASAP1Q9ULH1 1129 aa12□□□□□ -0.49
NUP54-207ENST00000508583 C5P01031 1676 aa12□□□□□ -0.49
NUP54-207ENST00000508583 ZNF831Q5JPB2 1677 aa12□□□□□ -0.49
NUP54-207ENST00000508583 PSDA5PKW4 1024 aaPredicted RBP11.99□□□□□ -0.49
NUP54-207ENST00000508583 BTBD11A6QL63 1104 aa11.99□□□□□ -0.49
NUP54-207ENST00000508583 NGEFQ8N5V2 710 aa11.99□□□□□ -0.49
NUP54-207ENST00000508583 CNKSR2Q8WXI2 1034 aa11.99□□□□□ -0.49
NUP54-207ENST00000508583 ATP6V1AP38606 617 aa11.98□□□□□ -0.49
NUP54-207ENST00000508583 KCNQ4P56696 695 aa11.98□□□□□ -0.49
NUP54-207ENST00000508583 CCDC184Q52MB2 194 aa11.98□□□□□ -0.49
NUP54-207ENST00000508583 NCBP3Q53F19 620 aaKnown RBP11.98□□□□□ -0.49
NUP54-207ENST00000508583 MCM10Q7L590 875 aa11.98□□□□□ -0.49
NUP54-207ENST00000508583 RBM42Q9BTD8 480 aaKnown RBP11.98□□□□□ -0.49
NUP54-207ENST00000508583 TAF1LQ8IZX4 1826 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 SIPA1L3O60292 1781 aaPredicted RBP11.97□□□□□ -0.49
NUP54-207ENST00000508583 APAF1O14727 1248 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 R3HDM1Q15032 1099 aaKnown RBP11.97□□□□□ -0.49
NUP54-207ENST00000508583 TAF7Q15545 349 aaPredicted RBP11.97□□□□□ -0.49
NUP54-207ENST00000508583 NEUROD2Q15784 382 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 ZNF790Q6PG37 636 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 VSIG10Q8N0Z9 540 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 ANO8Q9HCE9 1232 aaPredicted RBP11.97□□□□□ -0.49
NUP54-207ENST00000508583 LRRC4BQ9NT99 713 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 BABAM1Q9NWV8 329 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 TUBGCP6Q96RT7 1819 aa11.97□□□□□ -0.49
NUP54-207ENST00000508583 PTCD1O75127 700 aaKnown RBP11.96□□□□□ -0.49
NUP54-207ENST00000508583 SLC15A2Q16348 729 aa11.96□□□□□ -0.49
NUP54-207ENST00000508583 FAM9BQ8IZU0 186 aa11.96□□□□□ -0.49
NUP54-207ENST00000508583 FLAD1Q8NFF5 587 aa11.96□□□□□ -0.49
NUP54-207ENST00000508583 AK7Q96M32 723 aa11.96□□□□□ -0.49
NUP54-207ENST00000508583 FMNL2Q96PY5 1086 aa11.96□□□□□ -0.49
NUP54-207ENST00000508583 TEX13AQ9BXU3 409 aaPredicted RBP11.96□□□□□ -0.49
NUP54-207ENST00000508583 TFCP2L1Q9NZI6 479 aa11.96□□□□□ -0.49
NUP54-207ENST00000508583 CICQ96RK0 1608 aaPredicted RBP11.96□□□□□ -0.5
NUP54-207ENST00000508583 CASZ1Q86V15 1759 aa11.95□□□□□ -0.5
NUP54-207ENST00000508583 DCTN1Q14203 1278 aa11.95□□□□□ -0.5
NUP54-207ENST00000508583 RRP7AQ9Y3A4 280 aaKnown RBP11.95□□□□□ -0.5
NUP54-207ENST00000508583 UBR2Q8IWV8 1755 aa11.95□□□□□ -0.5
NUP54-207ENST00000508583 C4BP0C0L5 1744 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 STARD3NLO95772 234 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 SLC39A6Q13433 755 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 ZNF827Q17R98 1081 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 CCDC27Q2M243 656 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 COL5A3P25940 1745 aaPredicted RBP11.94□□□□□ -0.5
NUP54-207ENST00000508583 TJP1Q07157 1748 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 QSER1Q2KHR3 1735 aa11.94□□□□□ -0.5
NUP54-207ENST00000508583 CNTNAP4Q9C0A0 1308 aa11.93□□□□□ -0.5
NUP54-207ENST00000508583 KCPQ6ZWJ8 1503 aa11.93□□□□□ -0.5
NUP54-207ENST00000508583 RC3H1Q5TC82 1133 aaKnown RBP11.93□□□□□ -0.5
NUP54-207ENST00000508583 AKT1S1Q96B36 256 aa11.93□□□□□ -0.5
NUP54-207ENST00000508583 TSPYL4Q9UJ04 414 aa11.93□□□□□ -0.5
NUP54-207ENST00000508583 HEG1Q9ULI3 1381 aa11.92□□□□□ -0.5
NUP54-207ENST00000508583 SNRPA1P09661 255 aaKnown RBP11.92□□□□□ -0.5
NUP54-207ENST00000508583 SSFA2P28290 1259 aa11.92□□□□□ -0.5
NUP54-207ENST00000508583 ZNF496Q96IT1 587 aaPredicted RBP11.92□□□□□ -0.5
NUP54-207ENST00000508583 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
NUP54-207ENST00000508583 ITPK1Q13572 414 aa11.91□□□□□ -0.5
NUP54-207ENST00000508583 NPM2Q86SE8 214 aaKnown RBP11.91□□□□□ -0.5
NUP54-207ENST00000508583 LINC00116Q8NCU8 138 aa11.91□□□□□ -0.5
NUP54-207ENST00000508583 SLC16A10Q8TF71 515 aa11.91□□□□□ -0.5
NUP54-207ENST00000508583 THUMPD2Q9BTF0 503 aaKnown RBP11.91□□□□□ -0.5
NUP54-207ENST00000508583 CHMP4AQ9BY43 222 aa11.91□□□□□ -0.5
NUP54-207ENST00000508583 PDGFDQ9GZP0 370 aaPredicted RBP11.91□□□□□ -0.5
NUP54-207ENST00000508583 IFT57Q9NWB7 429 aa11.91□□□□□ -0.5
NUP54-207ENST00000508583 RTCBQ9Y3I0 505 aaKnown RBP11.91□□□□□ -0.5
NUP54-207ENST00000508583 KDM3BQ7LBC6 1761 aa11.91□□□□□ -0.5
NUP54-207ENST00000508583 LRP5O75197 1615 aa11.9□□□□□ -0.5
NUP54-207ENST00000508583 GNPATO15228 680 aa11.9□□□□□ -0.5
NUP54-207ENST00000508583 GNAI1P63096 354 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms