RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ZRANB1Q9UGI0 708 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 UGGT1Q9NYU2 1555 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 HECW2Q9P2P5 1572 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 VPS37DQ86XT2 251 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 AMOTL1Q8IY63 956 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 FOSBP53539 338 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 ZNF396Q96N95 335 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 TRIM35Q9UPQ4 493 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 DMRT2Q9Y5R5 561 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 SPHKAPQ2M3C7 1700 aa12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 SAFBQ15424 915 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIMCH1-205ENST00000503057 ARID3AQ99856 593 aa12.83□□□□□ -0.35
LIMCH1-205ENST00000503057 CASTP20810 708 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 KRT85P78386 507 aa12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 ZC3H6P61129 1189 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 MPRIPQ6WCQ1 1025 aa12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 CFAP65Q6ZU64 1925 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 TRMT2AQ8IZ69 625 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 TSPYL6Q8N831 410 aa12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 CLTCL1P53675 1640 aa12.83□□□□□ -0.36
LIMCH1-205ENST00000503057 IL13P35225 146 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 LARP1BQ659C4 914 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 MEIS3Q99687 375 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 MAP3K4Q9Y6R4 1608 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 SSFA2P28290 1259 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 TPD52L1Q16890 204 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 NOL10Q9BSC4 688 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 POLR1AO95602 1720 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 CLASP1Q7Z460 1538 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 CCDC192P0DO97 292 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 DCTPP1Q9H773 170 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 EFCAB6Q5THR3 1501 aa12.82□□□□□ -0.36
LIMCH1-205ENST00000503057 RBM42Q9BTD8 480 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 SOS1Q07889 1333 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 STRN4Q9NRL3 753 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 LAMC1P11047 1609 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 TPM2P07951 284 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 SDSP20132 328 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 CCDC57Q2TAC2 916 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 ZNF521Q96K83 1311 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 ERCC6L2Q5T890 1561 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 PRDM11Q9NQV5 511 aa12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 SH2B1Q9NRF2 756 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-205ENST00000503057 KINO60870 393 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 MTHFSDQ2M296 383 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 ZBTB7BO15156 539 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 CNNM1Q9NRU3 951 aa12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 TULP1O00294 542 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 TPM1P09493 284 aa12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 SART3Q15020 963 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 ZSCAN25Q6NSZ9 544 aa12.8□□□□□ -0.36
LIMCH1-205ENST00000503057 STK3Q13188 491 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 G3V3G9 751 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 DCAF8Q5TAQ9 597 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 CEP85Q6P2H3 762 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 PPP1R42Q7Z4L9 355 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 DDX54Q8TDD1 881 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 EVI5LQ96CN4 794 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 MAP3K2Q9Y2U5 619 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 MADDQ8WXG6 1647 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 FOXO3O43524 673 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 PDE1AP54750 535 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 PRPF40BQ6NWY9 871 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 MYD88Q99836 296 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 SDF4Q9BRK5 362 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 UPF3BQ9BZI7 483 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 CREBRFQ8IUR6 639 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 CTNNA3Q9UI47 895 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 MAP3K5Q99683 1374 aa12.79□□□□□ -0.36
LIMCH1-205ENST00000503057 ATP8B2P98198 1209 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 R3HCC1Q9Y3T6 440 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 SEC24BO95487 1268 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 TNMDQ9H2S6 317 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 ECHDC1Q9NTX5 307 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 ESPNB1AK53 854 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 XBP1P17861 261 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 CEP126Q9P2H0 1117 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 LIMCH1Q9UPQ0 1083 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 PI4KAP2A4QPH2 592 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 PI4KAP1Q8N8J0 262 aa12.78□□□□□ -0.36
LIMCH1-205ENST00000503057 KRT28Q7Z3Y7 464 aa12.77□□□□□ -0.36
LIMCH1-205ENST00000503057 ZNF592Q92610 1267 aa12.77□□□□□ -0.36
LIMCH1-205ENST00000503057 SIRT1Q96EB6 747 aa12.77□□□□□ -0.36
LIMCH1-205ENST00000503057 TRIM5Q9C035 493 aa12.77□□□□□ -0.36
LIMCH1-205ENST00000503057 BAG4O95429 457 aaKnown RBP12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 ANKRD24Q8TF21 1146 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 SPATA32Q96LK8 384 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 CFAP45Q9UL16 551 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 ANAPC15P60006 121 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 SBNO1A3KN83 1393 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 AKAP4Q5JQC9 854 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 OLFM4Q6UX06 510 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 BRMS1Q9HCU9 246 aa12.77□□□□□ -0.37
LIMCH1-205ENST00000503057 SYCE3A1L190 88 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 TSR1Q2NL82 804 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 MSH6P52701 1360 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 KIF24Q5T7B8 1368 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms