RNA–Protein interactions for RNA: ENST00000473515.5

SCML4-209, Transcript of Scm polycomb group protein like 4, human

TSL 2

Gene SCML4, Length 4,297 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCML4-209	ENST00000473515	TRIM35	Q9UPQ4	493 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	FIBP	O43427	364 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	MBD3	O95983	291 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	STK3	Q13188	491 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	TTC21A	Q8NDW8	1320 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	JARID2	Q92833	1246 aa	Predicted RBP	11.27	□□□□□ -0.6
SCML4-209	ENST00000473515	KIF1BP	Q96EK5	621 aa		11.27	□□□□□ -0.6
SCML4-209	ENST00000473515	MYD88	Q99836	296 aa		11.27	□□□□□ -0.6
SCML4-209	ENST00000473515	CWC22	Q9HCG8	908 aa	Known RBP	11.27	□□□□□ -0.6
SCML4-209	ENST00000473515	DBF4	Q9UBU7	674 aa	Predicted RBP	11.27	□□□□□ -0.6
SCML4-209	ENST00000473515	PTPRC	P08575	1304 aa		11.27	□□□□□ -0.6
SCML4-209	ENST00000473515	CREBRF	Q8IUR6	639 aa		11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	RASSF8	Q8NHQ8	419 aa		11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	CABLES1	Q8TDN4	633 aa		11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	TMX4	Q9H1E5	349 aa	Predicted RBP	11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	SYNE3	Q6ZMZ3	975 aa		11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	FBXW7	Q969H0	707 aa		11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	MADD	Q8WXG6	1647 aa		11.27	□□□□□ -0.61
SCML4-209	ENST00000473515	SLC39A6	Q13433	755 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	NFXL1	Q6ZNB6	911 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	CNNM1	Q9NRU3	951 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	SYCE3	A1L190	88 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	BOLA2	Q9H3K6	86 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	PSMA5	P28066	241 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	MCM2	P49736	904 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	ARHGAP45	Q92619	1136 aa		11.26	□□□□□ -0.61
SCML4-209	ENST00000473515	BECN2	A8MW95	431 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	LTK	P29376	864 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	AKAP17A	Q02040	695 aa	Known RBP	11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	PPP1R42	Q7Z4L9	355 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	IQGAP1	P46940	1657 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	IL13	P35225	146 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	PIP4K2A	P48426	406 aa	Predicted RBP	11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	CCDC57	Q2TAC2	916 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	LARP1	Q6PKG0	1096 aa	Known RBP	11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	SMC5	Q8IY18	1101 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	TSPY26P	Q9H489	355 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	ZBTB40	Q9NUA8	1239 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	CHPF2	Q9P2E5	772 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	CCDC39	Q9UFE4	941 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	MAP3K2	Q9Y2U5	619 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	ATP5J2-PTCD1	G3V325	749 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	PIP4K2B	P78356	416 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	JAKMIP1	Q96N16	626 aa	Known RBP	11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	CYP46A1	Q9Y6A2	500 aa		11.25	□□□□□ -0.61
SCML4-209	ENST00000473515	RRP9	O43818	475 aa	Known RBP	11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	BAG4	O95429	457 aa	Known RBP	11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	MEX3C	Q5U5Q3	659 aa	Known RBP	11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	LARP6	Q9BRS8	491 aa	Known RBP	11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	FLT4	P35916	1363 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	FSD2	A1L4K1	749 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	TBX22	Q9Y458	520 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	TRPM2	O94759	1503 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	GOLGA6L19	H0YKK7	550 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	HSPA2	P54652	639 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	ZSCAN30	Q86W11	494 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	STK11IP	Q8N1F8	1099 aa		11.24	□□□□□ -0.61
SCML4-209	ENST00000473515	HIP1	O00291	1037 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	CEBPZ	Q03701	1054 aa	Known RBP	11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	ZBTB3	Q9H5J0	574 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	CEP126	Q9P2H0	1117 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	VIRMA	Q69YN4	1812 aa	Known RBP	11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	ERVK-7	P63135	1459 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	GLRX3	O76003	335 aa	Known RBP	11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	TPM2	P07951	284 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	ZNF592	Q92610	1267 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	NEO1	Q92859	1461 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	CCDC158	Q5M9N0	1113 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515		A0A087WZG4	1122 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	ADAMTS2	O95450	1211 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	TRIM29	Q14134	588 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	TTC39A	Q5SRH9	613 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	G2E3	Q7L622	706 aa		11.23	□□□□□ -0.61
SCML4-209	ENST00000473515	ANKRD44	Q8N8A2	993 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	GC	P02774	474 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	BLOC1S2	Q6QNY1	142 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	ORAI2	Q96SN7	254 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	GDPD2	Q9HCC8	539 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	RBM27	Q9P2N5	1060 aa	Known RBP	11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	ZFYVE9	O95405	1425 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	CAST	P20810	708 aa	Known RBP	11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	TPM4	P67936	248 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	RRP12	Q5JTH9	1297 aa	Known RBP	11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	UBE3B	Q7Z3V4	1068 aa		11.22	□□□□□ -0.61
SCML4-209	ENST00000473515	RAD21	O60216	631 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	SDS	P20132	328 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	TTC22	Q5TAA0	569 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	PRPF40B	Q6NWY9	871 aa	Known RBP	11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	CADPS2	Q86UW7	1296 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	IFNL2	Q8IZJ0	200 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	CHMP4C	Q96CF2	233 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	MTMR7	Q9Y216	660 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	HOXC9	P31274	260 aa		11.21	□□□□□ -0.61
SCML4-209	ENST00000473515	CCDC34	Q96HJ3	373 aa		11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms