RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 CPSF1Q10570 1443 aaKnown RBP10.43□□□□□ -0.74
HDAC9-216ENST00000446646 CSB-PGBD3P0DP91 1061 aa10.43□□□□□ -0.74
HDAC9-216ENST00000446646 DPY19L2Q6NUT2 758 aa10.43□□□□□ -0.74
HDAC9-216ENST00000446646 C3orf67Q6ZVT6 689 aa10.43□□□□□ -0.74
HDAC9-216ENST00000446646 ARHGEF25Q86VW2 580 aa10.43□□□□□ -0.74
HDAC9-216ENST00000446646 KDM2AQ9Y2K7 1162 aa10.43□□□□□ -0.74
HDAC9-216ENST00000446646 PPIP5K1Q6PFW1 1433 aa10.42□□□□□ -0.74
HDAC9-216ENST00000446646 STK25O00506 426 aa10.42□□□□□ -0.74
HDAC9-216ENST00000446646 NMRK2Q9NPI5 230 aa10.42□□□□□ -0.74
HDAC9-216ENST00000446646 STK24Q9Y6E0 443 aa10.42□□□□□ -0.74
HDAC9-216ENST00000446646 RGPD5Q99666 1765 aa10.42□□□□□ -0.74
HDAC9-216ENST00000446646 G3V3G9 751 aa10.41□□□□□ -0.74
HDAC9-216ENST00000446646 SMIM5Q71RC9 77 aa10.41□□□□□ -0.74
HDAC9-216ENST00000446646 AMIGO3Q86WK7 504 aa10.41□□□□□ -0.74
HDAC9-216ENST00000446646 KAT6BQ8WYB5 2073 aa10.4□□□□□ -0.74
HDAC9-216ENST00000446646 ABCC6O95255 1503 aa10.4□□□□□ -0.74
HDAC9-216ENST00000446646 TOMM70O94826 608 aa10.4□□□□□ -0.74
HDAC9-216ENST00000446646 CD2APQ9Y5K6 639 aa10.4□□□□□ -0.74
HDAC9-216ENST00000446646 QSER1Q2KHR3 1735 aa10.4□□□□□ -0.74
HDAC9-216ENST00000446646 TRPM1Q7Z4N2 1603 aa10.4□□□□□ -0.75
HDAC9-216ENST00000446646 IGSF1Q8N6C5 1336 aa10.39□□□□□ -0.75
HDAC9-216ENST00000446646 WDR90Q96KV7 1748 aa10.39□□□□□ -0.75
HDAC9-216ENST00000446646 PIK3C2AO00443 1686 aa10.39□□□□□ -0.75
HDAC9-216ENST00000446646 SLC27A3Q5K4L6 730 aa10.39□□□□□ -0.75
HDAC9-216ENST00000446646 FAM163AQ96GL9 167 aaPredicted RBP10.39□□□□□ -0.75
HDAC9-216ENST00000446646 NSD2O96028 1365 aa10.39□□□□□ -0.75
HDAC9-216ENST00000446646 CABP1Q9NZU7 370 aa10.38□□□□□ -0.75
HDAC9-216ENST00000446646 CCDC7Q96M83 1385 aa10.38□□□□□ -0.75
HDAC9-216ENST00000446646 PRIM1P49642 420 aaKnown RBP10.37□□□□□ -0.75
HDAC9-216ENST00000446646 DCAF11Q8TEB1 546 aa10.37□□□□□ -0.75
HDAC9-216ENST00000446646 BOLA1Q9Y3E2 137 aa10.37□□□□□ -0.75
HDAC9-216ENST00000446646 ERBB3P21860 1342 aa10.36□□□□□ -0.75
HDAC9-216ENST00000446646 HSPA1AP0DMV8 641 aaKnown RBP10.36□□□□□ -0.75
HDAC9-216ENST00000446646 HSPA1BP0DMV9 641 aaKnown RBP10.36□□□□□ -0.75
HDAC9-216ENST00000446646 DDX54Q8TDD1 881 aaKnown RBP10.36□□□□□ -0.75
HDAC9-216ENST00000446646 NLRP2Q9NX02 1062 aa10.36□□□□□ -0.75
HDAC9-216ENST00000446646 NFAT5O94916 1531 aa10.36□□□□□ -0.75
HDAC9-216ENST00000446646 IL2RBP14784 551 aa10.35□□□□□ -0.75
HDAC9-216ENST00000446646 SRPK2P78362 688 aaKnown RBP10.35□□□□□ -0.75
HDAC9-216ENST00000446646 SYTL4Q96C24 671 aaPredicted RBP10.35□□□□□ -0.75
HDAC9-216ENST00000446646 CCNL1Q9UK58 526 aaPredicted RBP10.35□□□□□ -0.75
HDAC9-216ENST00000446646 BBXQ8WY36 941 aaPredicted RBP10.34□□□□□ -0.75
HDAC9-216ENST00000446646 RBM46Q8TBY0 533 aaKnown RBP10.33□□□□□ -0.76
HDAC9-216ENST00000446646 DAXXQ9UER7 740 aaPredicted RBP10.33□□□□□ -0.76
HDAC9-216ENST00000446646 CICQ96RK0 1608 aaPredicted RBP10.33□□□□□ -0.76
HDAC9-216ENST00000446646 TTC21BQ7Z4L5 1316 aa10.33□□□□□ -0.76
HDAC9-216ENST00000446646 NBPF1Q3BBV0 1214 aa10.32□□□□□ -0.76
HDAC9-216ENST00000446646 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.32□□□□□ -0.76
HDAC9-216ENST00000446646 LY75O60449 1722 aa10.31□□□□□ -0.76
HDAC9-216ENST00000446646 POTEMA6NI47 508 aa10.31□□□□□ -0.76
HDAC9-216ENST00000446646 MS4A4AQ96JQ5 239 aa10.31□□□□□ -0.76
HDAC9-216ENST00000446646 ANKRD36BQ8N2N9 1353 aa10.3□□□□□ -0.76
HDAC9-216ENST00000446646 POTEGQ6S5H5 508 aa10.3□□□□□ -0.76
HDAC9-216ENST00000446646 ANKRD24Q8TF21 1146 aa10.3□□□□□ -0.76
HDAC9-216ENST00000446646 LCE2DQ5TA82 110 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-216ENST00000446646 KCNH5Q8NCM2 988 aa10.29□□□□□ -0.76
HDAC9-216ENST00000446646 PXDNLA1KZ92 1463 aa10.29□□□□□ -0.76
HDAC9-216ENST00000446646 KCPQ6ZWJ8 1503 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 A0A0G2JLW4 131 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 PHF14O94880 888 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 FSTL1Q12841 308 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 ARHGAP27Q6ZUM4 889 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 MFRPQ9BY79 579 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 QRICH2Q9H0J4 1663 aa10.28□□□□□ -0.76
HDAC9-216ENST00000446646 DOT1LQ8TEK3 1739 aa10.27□□□□□ -0.76
HDAC9-216ENST00000446646 TOGARAM1Q9Y4F4 1720 aa10.27□□□□□ -0.76
HDAC9-216ENST00000446646 SNPHO15079 494 aa10.27□□□□□ -0.77
HDAC9-216ENST00000446646 FAM161AQ3B820 660 aa10.27□□□□□ -0.77
HDAC9-216ENST00000446646 C9orf131Q5VYM1 1079 aa10.27□□□□□ -0.77
HDAC9-216ENST00000446646 PAXIP1Q6ZW49 1069 aaPredicted RBP10.27□□□□□ -0.77
HDAC9-216ENST00000446646 MICALL2Q8IY33 904 aa10.27□□□□□ -0.77
HDAC9-216ENST00000446646 RRAGCQ9HB90 399 aa10.27□□□□□ -0.77
HDAC9-216ENST00000446646 BCS1LQ9Y276 419 aa10.27□□□□□ -0.77
HDAC9-216ENST00000446646 NME9Q86XW9 330 aa10.26□□□□□ -0.77
HDAC9-216ENST00000446646 FBXO22Q8NEZ5 403 aa10.26□□□□□ -0.77
HDAC9-216ENST00000446646 LTV1Q96GA3 475 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-216ENST00000446646 TMEM121BQ9BXQ6 578 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-216ENST00000446646 USP54Q70EL1 1684 aa10.25□□□□□ -0.77
HDAC9-216ENST00000446646 KIAA1551Q9HCM1 1747 aa10.25□□□□□ -0.77
HDAC9-216ENST00000446646 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.25□□□□□ -0.77
HDAC9-216ENST00000446646 C16orf71Q8IYS4 520 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-216ENST00000446646 CFAP44Q96MT7 982 aa10.25□□□□□ -0.77
HDAC9-216ENST00000446646 PCDH10Q9P2E7 1040 aa10.25□□□□□ -0.77
HDAC9-216ENST00000446646 CENPJQ9HC77 1338 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-216ENST00000446646 MEGF6O75095 1541 aa10.24□□□□□ -0.77
HDAC9-216ENST00000446646 ST18O60284 1047 aa10.24□□□□□ -0.77
HDAC9-216ENST00000446646 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.24□□□□□ -0.77
HDAC9-216ENST00000446646 USP47Q96K76 1375 aa10.24□□□□□ -0.77
HDAC9-216ENST00000446646 TNRC18O15417 2968 aaPredicted RBP10.23□□□□□ -0.77
HDAC9-216ENST00000446646 C5P01031 1676 aa10.23□□□□□ -0.77
HDAC9-216ENST00000446646 FOXN1O15353 648 aa10.23□□□□□ -0.77
HDAC9-216ENST00000446646 DPEP1P16444 411 aa10.23□□□□□ -0.77
HDAC9-216ENST00000446646 HS6ST3Q8IZP7 471 aa10.23□□□□□ -0.77
HDAC9-216ENST00000446646 N4BP2Q86UW6 1770 aaPredicted RBP10.22□□□□□ -0.77
HDAC9-216ENST00000446646 MMP10P09238 476 aa10.22□□□□□ -0.77
HDAC9-216ENST00000446646 FBLN1P23142 703 aa10.22□□□□□ -0.77
HDAC9-216ENST00000446646 TTC21AQ8NDW8 1320 aa10.22□□□□□ -0.77
HDAC9-216ENST00000446646 PALLDQ8WX93 1383 aa10.22□□□□□ -0.77
HDAC9-216ENST00000446646 FCHSD2O94868 740 aa10.21□□□□□ -0.77
HDAC9-216ENST00000446646 KCNA3P22001 575 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms