RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 PLEKHG5O94827 1062 aa20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 SKOR2Q2VWA4 1001 aaPredicted RBP20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 GRPEL1Q9HAV7 217 aa20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 RABEP1Q15276 862 aa20.27■□□□□ 0.84
CLCNKA-203ENST00000439316 CLEC17AQ6ZS10 378 aa20.27■□□□□ 0.84
CLCNKA-203ENST00000439316 NFAT5O94916 1531 aa20.26■□□□□ 0.83
CLCNKA-203ENST00000439316 HOXC9P31274 260 aa20.26■□□□□ 0.83
CLCNKA-203ENST00000439316 MCM10Q7L590 875 aa20.26■□□□□ 0.83
CLCNKA-203ENST00000439316 NPHP3Q7Z494 1330 aa20.26■□□□□ 0.83
CLCNKA-203ENST00000439316 C16orf71Q8IYS4 520 aaPredicted RBP20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 KCNH5Q8NCM2 988 aa20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 FOXD4L1Q9NU39 408 aa20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 SLAIN2Q9P270 581 aa20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 ALS2Q96Q42 1657 aa20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 ARHGEF10O15013 1369 aa20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 BRINP3Q76B58 766 aa20.25■□□□□ 0.83
CLCNKA-203ENST00000439316 USP26Q9BXU7 913 aa20.24■□□□□ 0.83
CLCNKA-203ENST00000439316 GCP02774 474 aa20.23■□□□□ 0.83
CLCNKA-203ENST00000439316 SSFA2P28290 1259 aa20.23■□□□□ 0.83
CLCNKA-203ENST00000439316 OTUD7AQ8TE49 926 aaPredicted RBP20.23■□□□□ 0.83
CLCNKA-203ENST00000439316 MEIS3Q99687 375 aa20.23■□□□□ 0.83
CLCNKA-203ENST00000439316 SLIT3O75094 1523 aa20.22■□□□□ 0.83
CLCNKA-203ENST00000439316 ZBTB7CA1YPR0 619 aa20.21■□□□□ 0.83
CLCNKA-203ENST00000439316 PXDNQ92626 1479 aa20.21■□□□□ 0.83
CLCNKA-203ENST00000439316 SDSP20132 328 aa20.21■□□□□ 0.83
CLCNKA-203ENST00000439316 EYA1Q99502 592 aa20.2■□□□□ 0.82
CLCNKA-203ENST00000439316 GAS2L3Q86XJ1 694 aa20.19■□□□□ 0.82
CLCNKA-203ENST00000439316 IP6K1Q92551 441 aa20.19■□□□□ 0.82
CLCNKA-203ENST00000439316 LTV1Q96GA3 475 aaPredicted RBP20.19■□□□□ 0.82
CLCNKA-203ENST00000439316 SMARCA5O60264 1052 aaPredicted RBP20.19■□□□□ 0.82
CLCNKA-203ENST00000439316 CLCN1P35523 988 aa20.19■□□□□ 0.82
CLCNKA-203ENST00000439316 CASC1Q6TDU7 716 aa20.19■□□□□ 0.82
CLCNKA-203ENST00000439316 GOLGA6L22H0YM25 854 aa20.18■□□□□ 0.82
CLCNKA-203ENST00000439316 KDRP35968 1356 aa20.18■□□□□ 0.82
CLCNKA-203ENST00000439316 MED1Q15648 1581 aaPredicted RBP20.18■□□□□ 0.82
CLCNKA-203ENST00000439316 TNS3Q68CZ2 1445 aa20.18■□□□□ 0.82
CLCNKA-203ENST00000439316 LRRC37A3O60309 1634 aa20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 BAG4O95429 457 aaKnown RBP20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 SLC4A2P04920 1241 aa20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 ARHGEF25Q86VW2 580 aa20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 IGSF1Q8N6C5 1336 aa20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 PHRF1Q9P1Y6 1649 aaKnown RBP20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 HMMRO75330 724 aa20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 IBTKQ9P2D0 1353 aaPredicted RBP20.17■□□□□ 0.82
CLCNKA-203ENST00000439316 SPATA31A3Q5VYP0 1347 aa20.16■□□□□ 0.82
CLCNKA-203ENST00000439316 CYP2E1P05181 493 aaPredicted RBP20.16■□□□□ 0.82
CLCNKA-203ENST00000439316 CCT4P50991 539 aaKnown RBP20.15■□□□□ 0.82
CLCNKA-203ENST00000439316 NUCB2P80303 420 aa20.15■□□□□ 0.82
CLCNKA-203ENST00000439316 KLHL40Q2TBA0 621 aa20.15■□□□□ 0.82
CLCNKA-203ENST00000439316 OSBPL3Q9H4L5 887 aa20.15■□□□□ 0.82
CLCNKA-203ENST00000439316 MTHFSDQ2M296 383 aaKnown RBP20.15■□□□□ 0.82
CLCNKA-203ENST00000439316 FAM208AQ9UK61 1670 aaKnown RBP20.15■□□□□ 0.82
CLCNKA-203ENST00000439316 TUBGCP6Q96RT7 1819 aa20.14■□□□□ 0.82
CLCNKA-203ENST00000439316 REC8O95072 547 aa20.14■□□□□ 0.81
CLCNKA-203ENST00000439316 CABLES1Q8TDN4 633 aa20.14■□□□□ 0.81
CLCNKA-203ENST00000439316 TSPYL4Q9UJ04 414 aa20.14■□□□□ 0.81
CLCNKA-203ENST00000439316 APBB1O00213 710 aa20.14■□□□□ 0.81
CLCNKA-203ENST00000439316 ZC3H6P61129 1189 aaKnown RBP20.14■□□□□ 0.81
CLCNKA-203ENST00000439316 G2E3Q7L622 706 aa20.14■□□□□ 0.81
CLCNKA-203ENST00000439316 MIS18AQ9NYP9 233 aa20.13■□□□□ 0.81
CLCNKA-203ENST00000439316 AK9Q5TCS8 1911 aa20.13■□□□□ 0.81
CLCNKA-203ENST00000439316 ST18O60284 1047 aa20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 RTF1Q92541 710 aaKnown RBP20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 CWC22Q9HCG8 908 aaKnown RBP20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 SOS2Q07890 1332 aaPredicted RBP20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 LTBP4Q8N2S1 1624 aa20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 N4BP2Q86UW6 1770 aaPredicted RBP20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 ERC2O15083 957 aa20.12■□□□□ 0.81
CLCNKA-203ENST00000439316 RGPD2P0DJD1 1756 aa20.11■□□□□ 0.81
CLCNKA-203ENST00000439316 F6X3S4 739 aa20.11■□□□□ 0.81
CLCNKA-203ENST00000439316 PDE1AP54750 535 aa20.11■□□□□ 0.81
CLCNKA-203ENST00000439316 USHBP1Q8N6Y0 703 aa20.1■□□□□ 0.81
CLCNKA-203ENST00000439316 AXIN2Q9Y2T1 843 aa20.1■□□□□ 0.81
CLCNKA-203ENST00000439316 SALL3Q9BXA9 1300 aa20.1■□□□□ 0.81
CLCNKA-203ENST00000439316 RGPD5Q99666 1765 aa20.1■□□□□ 0.81
CLCNKA-203ENST00000439316 SLC4A10Q6U841 1118 aa20.1■□□□□ 0.81
CLCNKA-203ENST00000439316 DDX49Q9Y6V7 483 aaKnown RBP20.1■□□□□ 0.81
CLCNKA-203ENST00000439316 CRYBG1Q9Y4K1 1723 aa20.09■□□□□ 0.81
CLCNKA-203ENST00000439316 GNAI2P04899 355 aa20.09■□□□□ 0.81
CLCNKA-203ENST00000439316 NBPF6Q5VWK0 638 aa20.09■□□□□ 0.81
CLCNKA-203ENST00000439316 NBPF4Q96M43 638 aa20.09■□□□□ 0.81
CLCNKA-203ENST00000439316 ESPNB1AK53 854 aa20.08■□□□□ 0.81
CLCNKA-203ENST00000439316 NHSL1Q5SYE7 1610 aa20.08■□□□□ 0.8
CLCNKA-203ENST00000439316 ERBB4Q15303 1308 aa20.08■□□□□ 0.8
CLCNKA-203ENST00000439316 HTATSF1O43719 755 aaKnown RBP20.08■□□□□ 0.8
CLCNKA-203ENST00000439316 LRRC59Q96AG4 307 aaKnown RBP20.08■□□□□ 0.8
CLCNKA-203ENST00000439316 PKP1Q13835 747 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 MCTP1Q6DN14 999 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 ANKRD24Q8TF21 1146 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 STK31Q9BXU1 1019 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 LMBRD1Q9NUN5 540 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 ZNF445P59923 1031 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 ZGPATQ8N5A5 531 aaKnown RBP20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 PXDNLA1KZ92 1463 aa20.06■□□□□ 0.8
CLCNKA-203ENST00000439316 CACNA1FO60840 1977 aa20.05■□□□□ 0.8
CLCNKA-203ENST00000439316 GNAI3P08754 354 aa20.04■□□□□ 0.8
CLCNKA-203ENST00000439316 CCDC173Q0VFZ6 552 aa20.04■□□□□ 0.8
CLCNKA-203ENST00000439316 FLIIQ13045 1269 aa20.04■□□□□ 0.8
CLCNKA-203ENST00000439316 TRIM44Q96DX7 344 aaPredicted RBP20.04■□□□□ 0.8
CLCNKA-203ENST00000439316 PPP1R9BQ96SB3 815 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms