RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HSP90AB1P08238 724 aaKnown RBP16.5■□□□□ 0.23
USP40-205ENST00000430158 MPRIPQ6WCQ1 1025 aa16.5■□□□□ 0.23
USP40-205ENST00000430158 IL17REQ8NFR9 667 aa16.5■□□□□ 0.23
USP40-205ENST00000430158 MAP3K5Q99683 1374 aa16.5■□□□□ 0.23
USP40-205ENST00000430158 MRC1P22897 1456 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 ERVV-2B6SEH9 535 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 RNMTO43148 476 aaKnown RBP16.49■□□□□ 0.23
USP40-205ENST00000430158 NFE2L2Q16236 605 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 C1orf141Q5JVX7 400 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 PIGBQ92521 554 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 RUNDC1Q96C34 613 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 PNNQ9H307 717 aaKnown RBP16.49■□□□□ 0.23
USP40-205ENST00000430158 CEMIPQ8WUJ3 1361 aa16.49■□□□□ 0.23
USP40-205ENST00000430158 GNAT3A8MTJ3 354 aa16.48■□□□□ 0.23
USP40-205ENST00000430158 DEFB132Q7Z7B7 95 aa16.48■□□□□ 0.23
USP40-205ENST00000430158 CCDC146Q8IYE0 955 aa16.48■□□□□ 0.23
USP40-205ENST00000430158 CAMKK2Q96RR4 588 aa16.48■□□□□ 0.23
USP40-205ENST00000430158 RGPD3A6NKT7 1758 aaPredicted RBP16.48■□□□□ 0.23
USP40-205ENST00000430158 SIPA1L3O60292 1781 aaPredicted RBP16.48■□□□□ 0.23
USP40-205ENST00000430158 RGPD4Q7Z3J3 1758 aa16.48■□□□□ 0.23
USP40-205ENST00000430158 PLSCR1O15162 318 aa16.47■□□□□ 0.23
USP40-205ENST00000430158 TMPOP42166 694 aaKnown RBP16.47■□□□□ 0.23
USP40-205ENST00000430158 HTATSF1O43719 755 aaKnown RBP16.46■□□□□ 0.23
USP40-205ENST00000430158 APBA3O96018 575 aa16.46■□□□□ 0.23
USP40-205ENST00000430158 PROM2Q8N271 834 aa16.46■□□□□ 0.23
USP40-205ENST00000430158 LY75O60449 1722 aa16.45■□□□□ 0.22
USP40-205ENST00000430158 EN1Q05925 392 aaPredicted RBP16.44■□□□□ 0.22
USP40-205ENST00000430158 NFATC2IPQ8NCF5 419 aa16.44■□□□□ 0.22
USP40-205ENST00000430158 SLC52A2Q9HAB3 445 aa16.44■□□□□ 0.22
USP40-205ENST00000430158 MAPK8IP3Q9UPT6 1336 aa16.44■□□□□ 0.22
USP40-205ENST00000430158 RREB1Q92766 1687 aa16.43■□□□□ 0.22
USP40-205ENST00000430158 SYTL4Q96C24 671 aaPredicted RBP16.43■□□□□ 0.22
USP40-205ENST00000430158 TRIM35Q9UPQ4 493 aa16.43■□□□□ 0.22
USP40-205ENST00000430158 APAF1O14727 1248 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 BAG6P46379 1132 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 RIPK4P57078 832 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 DCTN1Q14203 1278 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 EZH2Q15910 746 aaKnown RBP16.42■□□□□ 0.22
USP40-205ENST00000430158 MCM10Q7L590 875 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 ATG3Q9NT62 314 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 TMOD3Q9NYL9 352 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 ASAP1Q9ULH1 1129 aa16.42■□□□□ 0.22
USP40-205ENST00000430158 RRP7AQ9Y3A4 280 aaKnown RBP16.42■□□□□ 0.22
USP40-205ENST00000430158 PAPPAQ13219 1627 aa16.41■□□□□ 0.22
USP40-205ENST00000430158 NEFMP07197 916 aa16.41■□□□□ 0.22
USP40-205ENST00000430158 CABP4P57796 275 aa16.41■□□□□ 0.22
USP40-205ENST00000430158 SF3B2Q13435 895 aaKnown RBP16.41■□□□□ 0.22
USP40-205ENST00000430158 PITPNM1O00562 1244 aa16.4■□□□□ 0.22
USP40-205ENST00000430158 FAM9BQ8IZU0 186 aa16.4■□□□□ 0.22
USP40-205ENST00000430158 NUP188Q5SRE5 1749 aa16.39■□□□□ 0.21
USP40-205ENST00000430158 UBR2Q8IWV8 1755 aa16.39■□□□□ 0.21
USP40-205ENST00000430158 SLC4A9Q96Q91 983 aa16.39■□□□□ 0.21
USP40-205ENST00000430158 THUMPD2Q9BTF0 503 aaKnown RBP16.39■□□□□ 0.21
USP40-205ENST00000430158 LRRC4BQ9NT99 713 aa16.39■□□□□ 0.21
USP40-205ENST00000430158 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
USP40-205ENST00000430158 ZNF831Q5JPB2 1677 aa16.38■□□□□ 0.21
USP40-205ENST00000430158 TXNRD1Q16881 649 aa16.38■□□□□ 0.21
USP40-205ENST00000430158 RTF1Q92541 710 aaKnown RBP16.38■□□□□ 0.21
USP40-205ENST00000430158 TAF1LQ8IZX4 1826 aa16.38■□□□□ 0.21
USP40-205ENST00000430158 NEUROD2Q15784 382 aa16.37■□□□□ 0.21
USP40-205ENST00000430158 SMARCC1Q92922 1105 aaPredicted RBP16.37■□□□□ 0.21
USP40-205ENST00000430158 KCPQ6ZWJ8 1503 aa16.36■□□□□ 0.21
USP40-205ENST00000430158 FXR2P51116 673 aaKnown RBP eCLIP16.36■□□□□ 0.21
USP40-205ENST00000430158 SLC39A6Q13433 755 aa16.36■□□□□ 0.21
USP40-205ENST00000430158 CICQ96RK0 1608 aaPredicted RBP16.35■□□□□ 0.21
USP40-205ENST00000430158 KCNQ3O43525 872 aa16.35■□□□□ 0.21
USP40-205ENST00000430158 TEFQ10587 303 aa16.35■□□□□ 0.21
USP40-205ENST00000430158 CCDC27Q2M243 656 aa16.35■□□□□ 0.21
USP40-205ENST00000430158 SLC27A3Q5K4L6 730 aa16.35■□□□□ 0.21
USP40-205ENST00000430158 KDM3BQ7LBC6 1761 aa16.35■□□□□ 0.21
USP40-205ENST00000430158 LOC102724428A0A0B4J2F2 783 aa16.34■□□□□ 0.21
USP40-205ENST00000430158 KCNQ4P56696 695 aa16.34■□□□□ 0.21
USP40-205ENST00000430158 SIK1P57059 783 aa16.34■□□□□ 0.21
USP40-205ENST00000430158 LMOD3Q0VAK6 560 aa16.34■□□□□ 0.21
USP40-205ENST00000430158 TAF7Q15545 349 aaPredicted RBP16.34■□□□□ 0.21
USP40-205ENST00000430158 MYH14Q7Z406 1995 aaKnown RBP16.33■□□□□ 0.21
USP40-205ENST00000430158 SENP3-EIF4A1A0A087X0R7 540 aa16.33■□□□□ 0.2
USP40-205ENST00000430158 ZNF853P0CG23 659 aa16.33■□□□□ 0.2
USP40-205ENST00000430158 ITPK1Q13572 414 aa16.33■□□□□ 0.2
USP40-205ENST00000430158 ZNF790Q6PG37 636 aa16.33■□□□□ 0.2
USP40-205ENST00000430158 CHL1O00533 1208 aa16.32■□□□□ 0.2
USP40-205ENST00000430158 TJP1Q07157 1748 aa16.32■□□□□ 0.2
USP40-205ENST00000430158 WWC1Q8IX03 1113 aa16.32■□□□□ 0.2
USP40-205ENST00000430158 ANO8Q9HCE9 1232 aaPredicted RBP16.32■□□□□ 0.2
USP40-205ENST00000430158 MIS18AQ9NYP9 233 aa16.32■□□□□ 0.2
USP40-205ENST00000430158 COL5A3P25940 1745 aaPredicted RBP16.31■□□□□ 0.2
USP40-205ENST00000430158 C5P01031 1676 aa16.31■□□□□ 0.2
USP40-205ENST00000430158 HEG1Q9ULI3 1381 aa16.31■□□□□ 0.2
USP40-205ENST00000430158 ZNF521Q96K83 1311 aa16.31■□□□□ 0.2
USP40-205ENST00000430158 BTBD11A6QL63 1104 aa16.31■□□□□ 0.2
USP40-205ENST00000430158 ZNF496Q96IT1 587 aaPredicted RBP16.31■□□□□ 0.2
USP40-205ENST00000430158 BABAM1Q9NWV8 329 aa16.31■□□□□ 0.2
USP40-205ENST00000430158 CCNL1Q9UK58 526 aaPredicted RBP16.31■□□□□ 0.2
USP40-205ENST00000430158 PTCD1O75127 700 aaKnown RBP16.3■□□□□ 0.2
USP40-205ENST00000430158 ZBTB22O15209 634 aa16.29■□□□□ 0.2
USP40-205ENST00000430158 VSIG10Q8N0Z9 540 aa16.29■□□□□ 0.2
USP40-205ENST00000430158 NGEFQ8N5V2 710 aa16.29■□□□□ 0.2
USP40-205ENST00000430158 LINC00116Q8NCU8 138 aa16.29■□□□□ 0.2
USP40-205ENST00000430158 TUBGCP6Q96RT7 1819 aa16.29■□□□□ 0.2
USP40-205ENST00000430158 HAX1O00165 279 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms