RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 ZRANB1Q9UGI0 708 aa18.59■□□□□ 0.57
PHRF1-203ENST00000416188 DISP3Q9P2K9 1392 aa18.59■□□□□ 0.57
PHRF1-203ENST00000416188 WDHD1O75717 1129 aaPredicted RBP18.59■□□□□ 0.57
PHRF1-203ENST00000416188 ATP2B1P20020 1258 aa18.59■□□□□ 0.57
PHRF1-203ENST00000416188 GPS2Q13227 327 aa18.59■□□□□ 0.57
PHRF1-203ENST00000416188 TRAK2O60296 914 aa18.58■□□□□ 0.57
PHRF1-203ENST00000416188 TMEM2Q9UHN6 1383 aa18.58■□□□□ 0.57
PHRF1-203ENST00000416188 CAVIN1Q6NZI2 390 aaKnown RBP18.58■□□□□ 0.56
PHRF1-203ENST00000416188 NASPP49321 788 aaPredicted RBP18.57■□□□□ 0.56
PHRF1-203ENST00000416188 DDX17Q92841 729 aaKnown RBP18.57■□□□□ 0.56
PHRF1-203ENST00000416188 YTHDC2Q9H6S0 1430 aaKnown RBP18.57■□□□□ 0.56
PHRF1-203ENST00000416188 IDH1O75874 414 aaKnown RBP18.57■□□□□ 0.56
PHRF1-203ENST00000416188 MRE11P49959 708 aa18.57■□□□□ 0.56
PHRF1-203ENST00000416188 RABEP1Q15276 862 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 FAM98CQ17RN3 349 aaKnown RBP18.56■□□□□ 0.56
PHRF1-203ENST00000416188 SETDB2Q96T68 719 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 CDCA7Q9BWT1 371 aaPredicted RBP18.56■□□□□ 0.56
PHRF1-203ENST00000416188 ANKRD18BA2A2Z9 1011 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 XBP1P17861 261 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 BRMS1Q9HCU9 246 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 STK32BQ9NY57 414 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 C11orf95C9JLR9 678 aaPredicted RBP18.56■□□□□ 0.56
PHRF1-203ENST00000416188 LTKP29376 864 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 DNAAF4Q8WXU2 420 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 AKAP2Q9Y2D5 859 aa18.56■□□□□ 0.56
PHRF1-203ENST00000416188 PRPF40AO75400 957 aaKnown RBP18.55■□□□□ 0.56
PHRF1-203ENST00000416188 WWC3Q9ULE0 1092 aa18.55■□□□□ 0.56
PHRF1-203ENST00000416188 ABCC11Q96J66 1382 aa18.55■□□□□ 0.56
PHRF1-203ENST00000416188 RTCBQ9Y3I0 505 aaKnown RBP18.55■□□□□ 0.56
PHRF1-203ENST00000416188 SLC39A6Q13433 755 aa18.55■□□□□ 0.56
PHRF1-203ENST00000416188 TCOF1Q13428 1488 aaKnown RBP18.54■□□□□ 0.56
PHRF1-203ENST00000416188 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.54■□□□□ 0.56
PHRF1-203ENST00000416188 CDC5LQ99459 802 aaKnown RBP18.54■□□□□ 0.56
PHRF1-203ENST00000416188 FIBPO43427 364 aa18.54■□□□□ 0.56
PHRF1-203ENST00000416188 MCM2P49736 904 aa18.54■□□□□ 0.56
PHRF1-203ENST00000416188 FAM83GA6ND36 823 aa18.53■□□□□ 0.56
PHRF1-203ENST00000416188 ATP5J2-PTCD1G3V325 749 aa18.53■□□□□ 0.56
PHRF1-203ENST00000416188 IL1RAPL2Q9NP60 686 aa18.53■□□□□ 0.56
PHRF1-203ENST00000416188 PDCP20941 246 aa18.53■□□□□ 0.56
PHRF1-203ENST00000416188 TDO2P48775 406 aa18.53■□□□□ 0.56
PHRF1-203ENST00000416188 MVPQ14764 893 aaKnown RBP18.53■□□□□ 0.56
PHRF1-203ENST00000416188 OLFM4Q6UX06 510 aa18.53■□□□□ 0.56
PHRF1-203ENST00000416188 AKAP4Q5JQC9 854 aa18.52■□□□□ 0.56
PHRF1-203ENST00000416188 NAT10Q9H0A0 1025 aaKnown RBP18.52■□□□□ 0.56
PHRF1-203ENST00000416188 PARP3Q9Y6F1 533 aa18.52■□□□□ 0.56
PHRF1-203ENST00000416188 FLT4P35916 1363 aa18.52■□□□□ 0.56
PHRF1-203ENST00000416188 NPATQ14207 1427 aa18.52■□□□□ 0.56
PHRF1-203ENST00000416188 MBD3O95983 291 aa18.52■□□□□ 0.56
PHRF1-203ENST00000416188 NAP1L1P55209 391 aaKnown RBP18.52■□□□□ 0.55
PHRF1-203ENST00000416188 CNKSR2Q8WXI2 1034 aa18.52■□□□□ 0.55
PHRF1-203ENST00000416188 DZIP1Q86YF9 867 aaKnown RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 CRACR2BQ8N4Y2 399 aaPredicted RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 CWC25Q9NXE8 425 aaPredicted RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 BACH2Q9BYV9 841 aa18.51■□□□□ 0.55
PHRF1-203ENST00000416188 F6X3S4 739 aa18.51■□□□□ 0.55
PHRF1-203ENST00000416188 PDILTQ8N807 584 aa18.51■□□□□ 0.55
PHRF1-203ENST00000416188 ABCC1P33527 1531 aa18.51■□□□□ 0.55
PHRF1-203ENST00000416188 TSPOAP1O95153 1857 aa18.51■□□□□ 0.55
PHRF1-203ENST00000416188 KINO60870 393 aaKnown RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 MAP4K4O95819 1239 aaPredicted RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 SLC5A1P13866 664 aa18.51■□□□□ 0.55
PHRF1-203ENST00000416188 CEBPZQ03701 1054 aaKnown RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 EIF4A2Q14240 407 aaKnown RBP18.51■□□□□ 0.55
PHRF1-203ENST00000416188 MNS1Q8NEH6 495 aa18.5■□□□□ 0.55
PHRF1-203ENST00000416188 TRIM5Q9C035 493 aa18.5■□□□□ 0.55
PHRF1-203ENST00000416188 ARHGEF10O15013 1369 aa18.5■□□□□ 0.55
PHRF1-203ENST00000416188 SIRT1Q96EB6 747 aa18.5■□□□□ 0.55
PHRF1-203ENST00000416188 BAG6P46379 1132 aa18.5■□□□□ 0.55
PHRF1-203ENST00000416188 CFAP74Q9C0B2 1584 aa18.5■□□□□ 0.55
PHRF1-203ENST00000416188 ZNF771Q7L3S4 317 aaPredicted RBP18.49■□□□□ 0.55
PHRF1-203ENST00000416188 MAP3K2Q9Y2U5 619 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 IP6K1Q92551 441 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 USP5P45974 858 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 PCDH11XQ9BZA7 1347 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 PCDH11YQ9BZA8 1340 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 AIDAQ96BJ3 306 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 PRAG1Q86YV5 1406 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 CHD1O14646 1710 aa18.49■□□□□ 0.55
PHRF1-203ENST00000416188 TMEM94Q12767 1356 aa18.48■□□□□ 0.55
PHRF1-203ENST00000416188 MPHOSPH10O00566 681 aaKnown RBP18.48■□□□□ 0.55
PHRF1-203ENST00000416188 FLIIQ13045 1269 aa18.48■□□□□ 0.55
PHRF1-203ENST00000416188 AEBP1Q8IUX7 1158 aa18.48■□□□□ 0.55
PHRF1-203ENST00000416188 RPAP2Q8IXW5 612 aaPredicted RBP18.48■□□□□ 0.55
PHRF1-203ENST00000416188 ANXA1P04083 346 aa18.48■□□□□ 0.55
PHRF1-203ENST00000416188 NFATC2IPQ8NCF5 419 aa18.48■□□□□ 0.55
PHRF1-203ENST00000416188 CCNL1Q9UK58 526 aaPredicted RBP18.48■□□□□ 0.55
PHRF1-203ENST00000416188 NIP7Q9Y221 180 aaKnown RBP eCLIP18.48■□□□□ 0.55
PHRF1-203ENST00000416188 STK3Q13188 491 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 CHD1LQ86WJ1 897 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 CYP46A1Q9Y6A2 500 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 CCDC39Q9UFE4 941 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 R3HCC1Q9Y3T6 440 aaKnown RBP18.47■□□□□ 0.55
PHRF1-203ENST00000416188 OFD1O75665 1012 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 SLFN5Q08AF3 891 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 LDHAL6AQ6ZMR3 332 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 ANKRD13DQ6ZTN6 518 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 NLRP3Q96P20 1036 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 HOXC9P31274 260 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 DCAF5Q96JK2 942 aa18.47■□□□□ 0.55
PHRF1-203ENST00000416188 GNPATO15228 680 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms