RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 HOXC9P31274 260 aa11.51□□□□□ -0.57
NDE1-201ENST00000396354 PKP1Q13835 747 aa11.51□□□□□ -0.57
NDE1-201ENST00000396354 MCTP1Q6DN14 999 aa11.51□□□□□ -0.57
NDE1-201ENST00000396354 DDX49Q9Y6V7 483 aaKnown RBP11.51□□□□□ -0.57
NDE1-201ENST00000396354 GAS2L3Q86XJ1 694 aa11.51□□□□□ -0.57
NDE1-201ENST00000396354 FAM43AQ8N2R8 423 aa11.51□□□□□ -0.57
NDE1-201ENST00000396354 AMPHP49418 695 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 XPCQ01831 940 aaPredicted RBP11.5□□□□□ -0.57
NDE1-201ENST00000396354 LRRC37A3O60309 1634 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 G2E3Q7L622 706 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 GRPEL1Q9HAV7 217 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 LMOD3Q0VAK6 560 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 ABTB2Q8N961 1025 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 NFAT5O94916 1531 aa11.5□□□□□ -0.57
NDE1-201ENST00000396354 CALD1Q05682 793 aaKnown RBP11.49□□□□□ -0.57
NDE1-201ENST00000396354 PROSER2Q86WR7 435 aaPredicted RBP11.49□□□□□ -0.57
NDE1-201ENST00000396354 STRCP1A6NGW2 1772 aa11.49□□□□□ -0.57
NDE1-201ENST00000396354 ZNF335Q9H4Z2 1342 aaPredicted RBP11.49□□□□□ -0.57
NDE1-201ENST00000396354 LARP6Q9BRS8 491 aaKnown RBP11.49□□□□□ -0.57
NDE1-201ENST00000396354 MSH6P52701 1360 aa11.49□□□□□ -0.57
NDE1-201ENST00000396354 ARHGAP45Q92619 1136 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 ORAI2Q96SN7 254 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 ATP10DQ9P241 1426 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 PHF8Q9UPP1 1060 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 EXOC6BQ9Y2D4 811 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 MAP4K4O95819 1239 aaPredicted RBP11.48□□□□□ -0.57
NDE1-201ENST00000396354 CAVIN1Q6NZI2 390 aaKnown RBP11.48□□□□□ -0.57
NDE1-201ENST00000396354 GBP4Q96PP9 640 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 MEIS3Q99687 375 aa11.48□□□□□ -0.57
NDE1-201ENST00000396354 GSPT1P15170 499 aaKnown RBP11.47□□□□□ -0.57
NDE1-201ENST00000396354 ZGPATQ8N5A5 531 aaKnown RBP11.47□□□□□ -0.57
NDE1-201ENST00000396354 RNF214Q8ND24 703 aa11.47□□□□□ -0.57
NDE1-201ENST00000396354 RILPL2Q969X0 211 aa11.47□□□□□ -0.57
NDE1-201ENST00000396354 ADGRL3Q9HAR2 1447 aa11.46□□□□□ -0.57
NDE1-201ENST00000396354 DDX11L8A8MPP1 907 aa11.46□□□□□ -0.57
NDE1-201ENST00000396354 TRIM6-TRIM34B2RNG4 842 aa11.46□□□□□ -0.57
NDE1-201ENST00000396354 IFNLR1Q8IU57 520 aaPredicted RBP11.46□□□□□ -0.57
NDE1-201ENST00000396354 IL17REQ8NFR9 667 aa11.46□□□□□ -0.57
NDE1-201ENST00000396354 RBM27Q9P2N5 1060 aaKnown RBP11.46□□□□□ -0.57
NDE1-201ENST00000396354 K7ELQ4 463 aaPredicted RBP11.46□□□□□ -0.58
NDE1-201ENST00000396354 FAM208AQ9UK61 1670 aaKnown RBP11.45□□□□□ -0.58
NDE1-201ENST00000396354 ESCO1Q5FWF5 840 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 KIAA0232Q92628 1395 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 LRRC59Q96AG4 307 aaKnown RBP11.45□□□□□ -0.58
NDE1-201ENST00000396354 TMEM94Q12767 1356 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 ERBB4Q15303 1308 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 PRPF40AO75400 957 aaKnown RBP11.45□□□□□ -0.58
NDE1-201ENST00000396354 NBPF6Q5VWK0 638 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 NBPF4Q96M43 638 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 TSPYL4Q9UJ04 414 aa11.45□□□□□ -0.58
NDE1-201ENST00000396354 CDC45O75419 566 aa11.44□□□□□ -0.58
NDE1-201ENST00000396354 BMP2KLQ5H9B9 411 aa11.44□□□□□ -0.58
NDE1-201ENST00000396354 KIF2CQ99661 725 aa11.44□□□□□ -0.58
NDE1-201ENST00000396354 GOLGA6L22H0YM25 854 aa11.44□□□□□ -0.58
NDE1-201ENST00000396354 INTS3Q68E01 1043 aaKnown RBP11.44□□□□□ -0.58
NDE1-201ENST00000396354 GDPD2Q9HCC8 539 aa11.44□□□□□ -0.58
NDE1-201ENST00000396354 MRE11P49959 708 aa11.43□□□□□ -0.58
NDE1-201ENST00000396354 UPF3BQ9BZI7 483 aaKnown RBP11.43□□□□□ -0.58
NDE1-201ENST00000396354 AK9Q5TCS8 1911 aa11.43□□□□□ -0.58
NDE1-201ENST00000396354 IL1RAPL2Q9NP60 686 aa11.43□□□□□ -0.58
NDE1-201ENST00000396354 RTL1A6NKG5 1358 aa11.43□□□□□ -0.58
NDE1-201ENST00000396354 PLEKHM2Q8IWE5 1019 aa11.43□□□□□ -0.58
NDE1-201ENST00000396354 DDX54Q8TDD1 881 aaKnown RBP11.43□□□□□ -0.58
NDE1-201ENST00000396354 DDX17Q92841 729 aaKnown RBP11.43□□□□□ -0.58
NDE1-201ENST00000396354 API5Q9BZZ5 524 aaKnown RBP11.43□□□□□ -0.58
NDE1-201ENST00000396354 PXDNQ92626 1479 aa11.42□□□□□ -0.58
NDE1-201ENST00000396354 SDSP20132 328 aa11.42□□□□□ -0.58
NDE1-201ENST00000396354 GCC1Q96CN9 775 aa11.42□□□□□ -0.58
NDE1-201ENST00000396354 ANP32BQ92688 251 aaKnown RBP11.42□□□□□ -0.58
NDE1-201ENST00000396354 LGR6Q9HBX8 967 aa11.42□□□□□ -0.58
NDE1-201ENST00000396354 TRPM3Q9HCF6 1732 aaPredicted RBP11.42□□□□□ -0.58
NDE1-201ENST00000396354 NEK4P51957 841 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 FKBP5Q13451 457 aaPredicted RBP11.41□□□□□ -0.58
NDE1-201ENST00000396354 ANO2Q9NQ90 1003 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 ESPNB1AK53 854 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 KCNQ3O43525 872 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 EIF2S2P20042 333 aaKnown RBP11.41□□□□□ -0.58
NDE1-201ENST00000396354 NASPP49321 788 aaPredicted RBP11.41□□□□□ -0.58
NDE1-201ENST00000396354 CEP85Q6P2H3 762 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 RTF1Q92541 710 aaKnown RBP11.41□□□□□ -0.58
NDE1-201ENST00000396354 MAP3K5Q99683 1374 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 RGPD5Q99666 1765 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 RBM25P49756 843 aaKnown RBP11.41□□□□□ -0.58
NDE1-201ENST00000396354 AXIN2Q9Y2T1 843 aa11.41□□□□□ -0.58
NDE1-201ENST00000396354 GNAT3A8MTJ3 354 aa11.4□□□□□ -0.58
NDE1-201ENST00000396354 BAG4O95429 457 aaKnown RBP11.4□□□□□ -0.58
NDE1-201ENST00000396354 ANXA1P04083 346 aa11.4□□□□□ -0.58
NDE1-201ENST00000396354 PSME1Q06323 249 aa11.4□□□□□ -0.58
NDE1-201ENST00000396354 IP6K1Q92551 441 aa11.4□□□□□ -0.58
NDE1-201ENST00000396354 MED1Q15648 1581 aaPredicted RBP11.4□□□□□ -0.59
NDE1-201ENST00000396354 RBM10P98175 930 aaKnown RBP11.39□□□□□ -0.59
NDE1-201ENST00000396354 LMOD2Q6P5Q4 547 aa11.39□□□□□ -0.59
NDE1-201ENST00000396354 FSD2A1L4K1 749 aa11.39□□□□□ -0.59
NDE1-201ENST00000396354 RAB3GAP1Q15042 981 aa11.39□□□□□ -0.59
NDE1-201ENST00000396354 ANKRD44Q8N8A2 993 aa11.39□□□□□ -0.59
NDE1-201ENST00000396354 C19orf44Q9H6X5 657 aa11.39□□□□□ -0.59
NDE1-201ENST00000396354 DCTPP1Q9H773 170 aa11.39□□□□□ -0.59
NDE1-201ENST00000396354 PHRF1Q9P1Y6 1649 aaKnown RBP11.38□□□□□ -0.59
NDE1-201ENST00000396354 KIF24Q5T7B8 1368 aa11.38□□□□□ -0.59
NDE1-201ENST00000396354 XIRP1Q702N8 1843 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms