RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF772Q68DY9 489 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-205ENST00000392004 ZNF622Q969S3 477 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL6A3-205ENST00000392004 PHAXQ9H814 394 aaKnown RBP12.74□□□□□ -0.37
COL6A3-205ENST00000392004 FLIIQ13045 1269 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 ATF7IPQ6VMQ6 1270 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 IL1RAPL2Q9NP60 686 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 HDAC5Q9UQL6 1122 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 MAP3K2Q9Y2U5 619 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 LMTK2Q8IWU2 1503 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 DBF4Q9UBU7 674 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-205ENST00000392004 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 NOL8Q76FK4 1167 aaKnown RBP12.73□□□□□ -0.37
COL6A3-205ENST00000392004 MPHOSPH8Q99549 860 aa12.73□□□□□ -0.37
COL6A3-205ENST00000392004 PRAMEF22A3QJZ6 481 aa12.72□□□□□ -0.37
COL6A3-205ENST00000392004 SRGAP3O43295 1099 aa12.72□□□□□ -0.37
COL6A3-205ENST00000392004 USP16Q9Y5T5 823 aa12.72□□□□□ -0.37
COL6A3-205ENST00000392004 WDR17Q8IZU2 1322 aa12.72□□□□□ -0.37
COL6A3-205ENST00000392004 IFIT2P09913 472 aaKnown RBP12.72□□□□□ -0.37
COL6A3-205ENST00000392004 CASC1Q6TDU7 716 aa12.72□□□□□ -0.37
COL6A3-205ENST00000392004 EXOC6BQ9Y2D4 811 aa12.72□□□□□ -0.37
COL6A3-205ENST00000392004 RAD21O60216 631 aa12.71□□□□□ -0.37
COL6A3-205ENST00000392004 RARSP54136 660 aaKnown RBP12.71□□□□□ -0.37
COL6A3-205ENST00000392004 RTCBQ9Y3I0 505 aaKnown RBP12.71□□□□□ -0.37
COL6A3-205ENST00000392004 CWF19L2Q2TBE0 894 aaKnown RBP12.71□□□□□ -0.37
COL6A3-205ENST00000392004 CARD10Q9BWT7 1032 aa12.71□□□□□ -0.37
COL6A3-205ENST00000392004 BRPF3Q9ULD4 1205 aa12.71□□□□□ -0.37
COL6A3-205ENST00000392004 NIP7Q9Y221 180 aaKnown RBP eCLIP12.71□□□□□ -0.37
COL6A3-205ENST00000392004 PHKG2P15735 406 aa12.71□□□□□ -0.38
COL6A3-205ENST00000392004 SAMD1Q6SPF0 538 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-205ENST00000392004 ANKRD13DQ6ZTN6 518 aa12.71□□□□□ -0.38
COL6A3-205ENST00000392004 CCDC57Q2TAC2 916 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 FAM161AQ3B820 660 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 NBPF5PQ86XG9 351 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-205ENST00000392004 DZIP3Q86Y13 1208 aaKnown RBP12.7□□□□□ -0.38
COL6A3-205ENST00000392004 NEXMIFQ5QGS0 1516 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 NFKBIBQ15653 356 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 CCDC27Q2M243 656 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 G2E3Q7L622 706 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 STK11IPQ8N1F8 1099 aa12.7□□□□□ -0.38
COL6A3-205ENST00000392004 GJD4Q96KN9 370 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-205ENST00000392004 MAP4K4O95819 1239 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-205ENST00000392004 MFAP1P55081 439 aaKnown RBP12.69□□□□□ -0.38
COL6A3-205ENST00000392004 PREX1Q8TCU6 1659 aa12.69□□□□□ -0.38
COL6A3-205ENST00000392004 MAP3K5Q99683 1374 aa12.69□□□□□ -0.38
COL6A3-205ENST00000392004 DNAAF4Q8WXU2 420 aa12.69□□□□□ -0.38
COL6A3-205ENST00000392004 CHMP4CQ96CF2 233 aa12.69□□□□□ -0.38
COL6A3-205ENST00000392004 POLR3AO14802 1390 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-205ENST00000392004 JCADQ9P266 1359 aa12.69□□□□□ -0.38
COL6A3-205ENST00000392004 BAG6P46379 1132 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 TRIM35Q9UPQ4 493 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 CYP27B1O15528 508 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 APPP05067 770 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 NBPF14Q5TI25 921 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 SMARCC1Q92922 1105 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-205ENST00000392004 DNAJC2Q99543 621 aaKnown RBP12.68□□□□□ -0.38
COL6A3-205ENST00000392004 SLC52A2Q9HAB3 445 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 DCAF8L1A6NGE4 600 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 TULP1O00294 542 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-205ENST00000392004 GNAI2P04899 355 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 GNAI3P08754 354 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 ZNF652Q9Y2D9 606 aa12.68□□□□□ -0.38
COL6A3-205ENST00000392004 TRIM27P14373 513 aa12.67□□□□□ -0.38
COL6A3-205ENST00000392004 SLC4A3P48751 1232 aa12.67□□□□□ -0.38
COL6A3-205ENST00000392004 KIAA1211Q6ZU35 1233 aa12.67□□□□□ -0.38
COL6A3-205ENST00000392004 PSDA5PKW4 1024 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-205ENST00000392004 SETDB2Q96T68 719 aa12.67□□□□□ -0.38
COL6A3-205ENST00000392004 IQSEC3Q9UPP2 1182 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-205ENST00000392004 INSRP06213 1382 aa12.67□□□□□ -0.38
COL6A3-205ENST00000392004 SPATA31D1Q6ZQQ2 1576 aa12.67□□□□□ -0.38
COL6A3-205ENST00000392004 FAM89AQ96GI7 184 aa12.66□□□□□ -0.38
COL6A3-205ENST00000392004 LRRFIP2Q9Y608 721 aaKnown RBP12.66□□□□□ -0.38
COL6A3-205ENST00000392004 EN1Q05925 392 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-205ENST00000392004 CHAF1AQ13111 956 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-205ENST00000392004 GPATCH3Q96I76 525 aa12.66□□□□□ -0.38
COL6A3-205ENST00000392004 ATF5Q9Y2D1 282 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-205ENST00000392004 TRAPPC3LQ5T215 181 aa12.66□□□□□ -0.38
COL6A3-205ENST00000392004 ANKIB1Q9P2G1 1089 aa12.66□□□□□ -0.38
COL6A3-205ENST00000392004 HCLS1P14317 486 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-205ENST00000392004 NUTM1Q86Y26 1132 aa12.66□□□□□ -0.38
COL6A3-205ENST00000392004 DEFB132Q7Z7B7 95 aa12.65□□□□□ -0.38
COL6A3-205ENST00000392004 CDCA7Q9BWT1 371 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-205ENST00000392004 STK32BQ9NY57 414 aa12.65□□□□□ -0.38
COL6A3-205ENST00000392004 C6orf229H3BNL8 230 aa12.65□□□□□ -0.38
COL6A3-205ENST00000392004 SMARCA5O60264 1052 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-205ENST00000392004 HELBQ8NG08 1087 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-205ENST00000392004 PIGBQ92521 554 aa12.65□□□□□ -0.38
COL6A3-205ENST00000392004 HYPKQ9NX55 129 aa12.65□□□□□ -0.38
COL6A3-205ENST00000392004 MTMR7Q9Y216 660 aa12.65□□□□□ -0.38
COL6A3-205ENST00000392004 LOC102724428A0A0B4J2F2 783 aa12.65□□□□□ -0.39
COL6A3-205ENST00000392004 SIK1P57059 783 aa12.65□□□□□ -0.39
COL6A3-205ENST00000392004 RBM6P78332 1123 aaKnown RBP12.65□□□□□ -0.39
COL6A3-205ENST00000392004 FAM196AQ6ZSG2 479 aa12.64□□□□□ -0.39
COL6A3-205ENST00000392004 TNS3Q68CZ2 1445 aa12.64□□□□□ -0.39
COL6A3-205ENST00000392004 FKBP4Q02790 459 aaKnown RBP eCLIP12.64□□□□□ -0.39
COL6A3-205ENST00000392004 WASHC4Q2M389 1173 aa12.64□□□□□ -0.39
COL6A3-205ENST00000392004 CLASRPQ8N2M8 674 aaKnown RBP12.64□□□□□ -0.39
COL6A3-205ENST00000392004 RPGRQ92834 1020 aaKnown RBP12.64□□□□□ -0.39
COL6A3-205ENST00000392004 ABCF2Q9UG63 623 aa12.64□□□□□ -0.39
COL6A3-205ENST00000392004 JAG2Q9Y219 1238 aa12.64□□□□□ -0.39
COL6A3-205ENST00000392004 MROH1Q8NDA8 1641 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms