RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CRACR2BQ8N4Y2 399 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 TMEM266Q2M3C6 531 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 ERBINQ96RT1 1412 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 FILIP1Q7Z7B0 1213 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 TMCO3Q6UWJ1 677 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 CABP1Q9NZU7 370 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 EHBP1L1Q8N3D4 1523 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 PLEKHH1Q9ULM0 1364 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 GNAT3A8MTJ3 354 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 MKNK2Q9HBH9 465 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 RPAP2Q8IXW5 612 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 CCDC178Q5BJE1 867 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 ANO10Q9NW15 660 aa14.89□□□□□ -0.03
CCDC88C-204ENST00000389857 KIF20AO95235 890 aa14.88□□□□□ -0.03
CCDC88C-204ENST00000389857 PPM1EQ8WY54 764 aa14.88□□□□□ -0.03
CCDC88C-204ENST00000389857 CCDC113Q9H0I3 377 aa14.88□□□□□ -0.03
CCDC88C-204ENST00000389857 SUPT6HQ7KZ85 1726 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-204ENST00000389857 HOOK3Q86VS8 718 aa14.88□□□□□ -0.03
CCDC88C-204ENST00000389857 ATAD2Q6PL18 1390 aa14.88□□□□□ -0.03
CCDC88C-204ENST00000389857 HECW1Q76N89 1606 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 HMGB1P09429 215 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 IBSPP21815 317 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 SFPQP23246 707 aaKnown RBP eCLIP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 IFFO1Q0D2I5 559 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 PRDM11Q9NQV5 511 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 LUZP1Q86V48 1076 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 DHX37Q8IY37 1157 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 KIF1BPQ96EK5 621 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 GOPCQ9HD26 462 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 ABCF2Q9UG63 623 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 CCDC83Q8IWF9 413 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 GSTTP1A0A1W2PQM5 241 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 PPM1FP49593 454 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 SLF2Q8IX21 1173 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 TAOK3Q9H2K8 898 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 USO1O60763 962 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 ZPR1O75312 459 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 LARP1Q6PKG0 1096 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 BICDL1Q6ZP65 573 aa14.87□□□□□ -0.03
CCDC88C-204ENST00000389857 PTPN14Q15678 1187 aa14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 GIMAP7Q8NHV1 300 aa14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 FEZ1Q99689 392 aa14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 FERMT2Q96AC1 680 aa14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 DDX11Q96FC9 970 aa14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 BRPF3Q9ULD4 1205 aa14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 IFIT1P09914 478 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.86□□□□□ -0.03
CCDC88C-204ENST00000389857 FCHSD2O94868 740 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 CEP63Q96MT8 703 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 POLA1P09884 1462 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 C9orf84Q5VXU9 1444 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 KIAA1107Q9UPP5 1409 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 SMC1AQ14683 1233 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 CCDC183Q5T5S1 534 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 MICALCLQ6ZW33 695 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 DZIP1Q86YF9 867 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 CTCFLQ8NI51 663 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 CTAGE5O15320 804 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 GLRX3O76003 335 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 NAPBQ9H115 298 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 ANKRD18BA2A2Z9 1011 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 ANKLE2Q86XL3 938 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 A0A087WZG4 1122 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 CAMK4Q16566 473 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 GIGYF2Q6Y7W6 1299 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 BACH2Q9BYV9 841 aa14.85□□□□□ -0.03
CCDC88C-204ENST00000389857 POGZQ7Z3K3 1410 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 TOP1P11387 765 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 UBA5Q9GZZ9 404 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 SH2B1Q9NRF2 756 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 SLC52A1Q9NWF4 448 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 RAD54L2Q9Y4B4 1467 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 GRIPAP1Q4V328 841 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 MPNDQ8N594 471 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 KCNH5Q8NCM2 988 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 SLC12A5Q9H2X9 1139 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 IL1RAPL2Q9NP60 686 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 MINDY4BA8MYZ0 360 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 KIF18AQ8NI77 898 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 CTNNBL1Q8WYA6 563 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 ANKIB1Q9P2G1 1089 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 SSRP1Q08945 709 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 CETN1Q12798 172 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 SCAND2PQ9GZW5 306 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 RPGRIP1LQ68CZ1 1315 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 BAG4O95429 457 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 ZNF444Q8N0Y2 327 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 AKNAQ7Z591 1439 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 PAFAH1B1P43034 410 aa14.84□□□□□ -0.03
CCDC88C-204ENST00000389857 ERICH4A6NGS2 130 aa14.83□□□□□ -0.03
CCDC88C-204ENST00000389857 MAP3K12Q12852 859 aa14.83□□□□□ -0.03
CCDC88C-204ENST00000389857 NFE2L2Q16236 605 aa14.83□□□□□ -0.03
CCDC88C-204ENST00000389857 IQCA1Q86XH1 822 aa14.83□□□□□ -0.03
CCDC88C-204ENST00000389857 C8orf76Q96K31 380 aa14.83□□□□□ -0.03
CCDC88C-204ENST00000389857 NUP88Q99567 741 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 SLC5A1P13866 664 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 CTNNA2P26232 953 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 CCDC96Q2M329 555 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 NUTM1Q86Y26 1132 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms