RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 UBE2Q2Q8WVN8 375 aa19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 FOXD4L4Q8WXT5 416 aaPredicted RBP19.98■□□□□ 0.79
NKX3-1-201ENST00000380871 IL17REQ8NFR9 667 aa19.97■□□□□ 0.79
NKX3-1-201ENST00000380871 CLEC17AQ6ZS10 378 aa19.96■□□□□ 0.79
NKX3-1-201ENST00000380871 HAP1P54257 671 aaPredicted RBP19.96■□□□□ 0.79
NKX3-1-201ENST00000380871 RPAP2Q8IXW5 612 aaPredicted RBP19.96■□□□□ 0.79
NKX3-1-201ENST00000380871 KIF24Q5T7B8 1368 aa19.96■□□□□ 0.79
NKX3-1-201ENST00000380871 RGPD8O14715 1765 aaPredicted RBP19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 DIP2AQ14689 1571 aa19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 CYP2E1P05181 493 aaPredicted RBP19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 AKAP12Q02952 1782 aa19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 IGSF1Q8N6C5 1336 aa19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 LMBRD1Q9NUN5 540 aa19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 RBM27Q9P2N5 1060 aaKnown RBP19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 SSH2Q76I76 1423 aa19.95■□□□□ 0.78
NKX3-1-201ENST00000380871 ANXA1P04083 346 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 PEAK1Q9H792 1746 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 NBPF6Q5VWK0 638 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 NBPF4Q96M43 638 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 ZDHHC9Q9Y397 364 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 CEP170BQ9Y4F5 1589 aaPredicted RBP19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 PTMSP20962 102 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 LGR6Q9HBX8 967 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 EXOC6BQ9Y2D4 811 aa19.94■□□□□ 0.78
NKX3-1-201ENST00000380871 RIMS1Q86UR5 1692 aaKnown RBP19.93■□□□□ 0.78
NKX3-1-201ENST00000380871 ARHGEF10O15013 1369 aa19.93■□□□□ 0.78
NKX3-1-201ENST00000380871 PRPF40AO75400 957 aaKnown RBP19.93■□□□□ 0.78
NKX3-1-201ENST00000380871 ZSCAN23Q3MJ62 389 aa19.93■□□□□ 0.78
NKX3-1-201ENST00000380871 CRB1P82279 1406 aa19.92■□□□□ 0.78
NKX3-1-201ENST00000380871 ARHGAP23Q9P227 1491 aa19.92■□□□□ 0.78
NKX3-1-201ENST00000380871 MPRIPQ6WCQ1 1025 aa19.92■□□□□ 0.78
NKX3-1-201ENST00000380871 NUCB2P80303 420 aa19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 PROSER2Q86WR7 435 aaPredicted RBP19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 DDX17Q92841 729 aaKnown RBP19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 KCNQ3O43525 872 aa19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 FLIIQ13045 1269 aa19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 CASC1Q6TDU7 716 aa19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 NOL8Q76FK4 1167 aaKnown RBP19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 GPT2Q8TD30 523 aa19.91■□□□□ 0.78
NKX3-1-201ENST00000380871 ST18O60284 1047 aa19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 ZC3H6P61129 1189 aaKnown RBP19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 FER1L4A9Z1Z3 1794 aa19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 CCDC173Q0VFZ6 552 aa19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 PHAXQ9H814 394 aaKnown RBP19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 NSFL1CQ9UNZ2 370 aaKnown RBP19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 SLIT1O75093 1534 aa19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 PTPRCP08575 1304 aa19.9■□□□□ 0.78
NKX3-1-201ENST00000380871 PDE1AP54750 535 aa19.89■□□□□ 0.78
NKX3-1-201ENST00000380871 TAF7Q15545 349 aaPredicted RBP19.89■□□□□ 0.78
NKX3-1-201ENST00000380871 HDGFL1Q5TGJ6 251 aa19.89■□□□□ 0.78
NKX3-1-201ENST00000380871 RBSNQ9H1K0 784 aa19.89■□□□□ 0.78
NKX3-1-201ENST00000380871 NRKQ7Z2Y5 1582 aa19.89■□□□□ 0.77
NKX3-1-201ENST00000380871 ERC2O15083 957 aa19.89■□□□□ 0.77
NKX3-1-201ENST00000380871 CCDC30Q5VVM6 783 aa19.89■□□□□ 0.77
NKX3-1-201ENST00000380871 PPP1R9BQ96SB3 815 aa19.89■□□□□ 0.77
NKX3-1-201ENST00000380871 PRIM1P49642 420 aaKnown RBP19.88■□□□□ 0.77
NKX3-1-201ENST00000380871 KIAA0232Q92628 1395 aa19.88■□□□□ 0.77
NKX3-1-201ENST00000380871 ZNF530Q6P9A1 599 aaPredicted RBP19.88■□□□□ 0.77
NKX3-1-201ENST00000380871 REC8O95072 547 aa19.87■□□□□ 0.77
NKX3-1-201ENST00000380871 NEK4P51957 841 aa19.87■□□□□ 0.77
NKX3-1-201ENST00000380871 PALD1Q9ULE6 856 aa19.87■□□□□ 0.77
NKX3-1-201ENST00000380871 ZNF445P59923 1031 aa19.86■□□□□ 0.77
NKX3-1-201ENST00000380871 TEFQ10587 303 aa19.86■□□□□ 0.77
NKX3-1-201ENST00000380871 IBTKQ9P2D0 1353 aaPredicted RBP19.86■□□□□ 0.77
NKX3-1-201ENST00000380871 IP6K1Q92551 441 aa19.86■□□□□ 0.77
NKX3-1-201ENST00000380871 PNMA6EA0A0J9YXQ4 647 aa19.85■□□□□ 0.77
NKX3-1-201ENST00000380871 HMMRO75330 724 aa19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 GCP02774 474 aa19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 FOXD4L6Q3SYB3 417 aaPredicted RBP19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 FOXD4L3Q6VB84 417 aaPredicted RBP19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 TMEM63CQ9P1W3 806 aa19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 LRRFIP2Q9Y608 721 aaKnown RBP19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 MAP3K5Q99683 1374 aa19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 GNAI2P04899 355 aa19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 CCT4P50991 539 aaKnown RBP19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 ANP32BQ92688 251 aaKnown RBP19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 TMX3Q96JJ7 454 aa19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 CWC22Q9HCG8 908 aaKnown RBP19.84■□□□□ 0.77
NKX3-1-201ENST00000380871 KDRP35968 1356 aa19.83■□□□□ 0.77
NKX3-1-201ENST00000380871 ZSCAN30Q86W11 494 aa19.83■□□□□ 0.76
NKX3-1-201ENST00000380871 SYCE3A1L190 88 aa19.82■□□□□ 0.76
NKX3-1-201ENST00000380871 RILPL2Q969X0 211 aa19.82■□□□□ 0.76
NKX3-1-201ENST00000380871 IL1RAPL2Q9NP60 686 aa19.82■□□□□ 0.76
NKX3-1-201ENST00000380871 TOPAZ1Q8N9V7 1692 aa19.82■□□□□ 0.76
NKX3-1-201ENST00000380871 UNC5CLQ8IV45 518 aa19.82■□□□□ 0.76
NKX3-1-201ENST00000380871 CABLES1Q8TDN4 633 aa19.82■□□□□ 0.76
NKX3-1-201ENST00000380871 HSP90AA2PQ14568 343 aaPredicted RBP19.81■□□□□ 0.76
NKX3-1-201ENST00000380871 KRT28Q7Z3Y7 464 aa19.81■□□□□ 0.76
NKX3-1-201ENST00000380871 IL25Q9H293 177 aa19.81■□□□□ 0.76
NKX3-1-201ENST00000380871 OSBPL3Q9H4L5 887 aa19.81■□□□□ 0.76
NKX3-1-201ENST00000380871 TRIM6-TRIM34B2RNG4 842 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 ESYT1Q9BSJ8 1104 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 UPF3BQ9BZI7 483 aaKnown RBP19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 ANO2Q9NQ90 1003 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 CHPF2Q9P2E5 772 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 BTBD11A6QL63 1104 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 KIAA1211Q6ZU35 1233 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 PIK3C2AO00443 1686 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 ANKRD24Q8TF21 1146 aa19.8■□□□□ 0.76
NKX3-1-201ENST00000380871 SALL3Q9BXA9 1300 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms