RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 KIAA1211Q6ZU35 1233 aa17.35■□□□□ 0.37
CLCNKA-202ENST00000375692 ZNF445P59923 1031 aa17.35■□□□□ 0.37
CLCNKA-202ENST00000375692 CEP85Q6P2H3 762 aa17.35■□□□□ 0.37
CLCNKA-202ENST00000375692 VSIG10Q8N0Z9 540 aa17.35■□□□□ 0.37
CLCNKA-202ENST00000375692 ABTB2Q8N961 1025 aa17.35■□□□□ 0.37
CLCNKA-202ENST00000375692 IBTKQ9P2D0 1353 aaPredicted RBP17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 ATF3P18847 181 aa17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 GLIPR1L2Q4G1C9 344 aa17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 FOXD4L5Q5VV16 416 aaPredicted RBP17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 FOXD4L4Q8WXT5 416 aaPredicted RBP17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 ZDHHC9Q9Y397 364 aa17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 LMOD3Q0VAK6 560 aa17.34■□□□□ 0.37
CLCNKA-202ENST00000375692 PRIM1P49642 420 aaKnown RBP17.33■□□□□ 0.36
CLCNKA-202ENST00000375692 AEBP1Q8IUX7 1158 aa17.33■□□□□ 0.36
CLCNKA-202ENST00000375692 GPT2Q8TD30 523 aa17.33■□□□□ 0.36
CLCNKA-202ENST00000375692 NRKQ7Z2Y5 1582 aa17.33■□□□□ 0.36
CLCNKA-202ENST00000375692 MEIS3Q99687 375 aa17.33■□□□□ 0.36
CLCNKA-202ENST00000375692 ATP10DQ9P241 1426 aa17.32■□□□□ 0.36
CLCNKA-202ENST00000375692 MSNP26038 577 aaKnown RBP17.32■□□□□ 0.36
CLCNKA-202ENST00000375692 TTC21AQ8NDW8 1320 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 OVOS2A0A0J9YW53 1432 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 OVOS2Q6IE36 1432 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 DLG5Q8TDM6 1919 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 MCM10Q7L590 875 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 ST18O60284 1047 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 TPM2P07951 284 aa17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 RPAP2Q8IXW5 612 aaPredicted RBP17.31■□□□□ 0.36
CLCNKA-202ENST00000375692 NSFL1CQ9UNZ2 370 aaKnown RBP17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 KIF24Q5T7B8 1368 aa17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 C1orf167Q5SNV9 1468 aa17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 MSH6P52701 1360 aa17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 OFD1O75665 1012 aa17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 LMOD2Q6P5Q4 547 aa17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 CASC1Q6TDU7 716 aa17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 CWC22Q9HCG8 908 aaKnown RBP17.3■□□□□ 0.36
CLCNKA-202ENST00000375692 RGS12O14924 1447 aa17.29■□□□□ 0.36
CLCNKA-202ENST00000375692 RTL1A6NKG5 1358 aa17.29■□□□□ 0.36
CLCNKA-202ENST00000375692 HSP90AB2PQ58FF8 381 aa17.29■□□□□ 0.36
CLCNKA-202ENST00000375692 AATKQ6ZMQ8 1374 aa17.29■□□□□ 0.36
CLCNKA-202ENST00000375692 SULT6B1Q6IMI4 303 aa17.29■□□□□ 0.36
CLCNKA-202ENST00000375692 CDK12Q9NYV4 1490 aaPredicted RBP17.28■□□□□ 0.36
CLCNKA-202ENST00000375692 TSHZ3Q63HK5 1081 aa17.28■□□□□ 0.36
CLCNKA-202ENST00000375692 MIS18AQ9NYP9 233 aa17.28■□□□□ 0.36
CLCNKA-202ENST00000375692 MAP3K19Q56UN5 1328 aa17.27■□□□□ 0.36
CLCNKA-202ENST00000375692 TMEM63CQ9P1W3 806 aa17.27■□□□□ 0.36
CLCNKA-202ENST00000375692 MST1RQ04912 1400 aa17.27■□□□□ 0.36
CLCNKA-202ENST00000375692 ERC2O15083 957 aa17.27■□□□□ 0.35
CLCNKA-202ENST00000375692 REC8O95072 547 aa17.27■□□□□ 0.35
CLCNKA-202ENST00000375692 KRT28Q7Z3Y7 464 aa17.27■□□□□ 0.35
CLCNKA-202ENST00000375692 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.27■□□□□ 0.35
CLCNKA-202ENST00000375692 USP31Q70CQ4 1352 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 PIK3C2AO00443 1686 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 SYCE3A1L190 88 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 SLC4A2P04920 1241 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 CADPS2Q86UW7 1296 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 ZMYND15Q9H091 742 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 CHL1O00533 1208 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 NEK4P51957 841 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 SLC4A10Q6U841 1118 aa17.26■□□□□ 0.35
CLCNKA-202ENST00000375692 F6X3S4 739 aa17.25■□□□□ 0.35
CLCNKA-202ENST00000375692 RBM10P98175 930 aaKnown RBP17.25■□□□□ 0.35
CLCNKA-202ENST00000375692 EIF4A2Q14240 407 aaKnown RBP17.25■□□□□ 0.35
CLCNKA-202ENST00000375692 PDLIM2Q96JY6 352 aa17.25■□□□□ 0.35
CLCNKA-202ENST00000375692 R3HCC1Q9Y3T6 440 aaKnown RBP17.25■□□□□ 0.35
CLCNKA-202ENST00000375692 NOL8Q76FK4 1167 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-202ENST00000375692 G2E3Q7L622 706 aa17.24■□□□□ 0.35
CLCNKA-202ENST00000375692 PDE1AP54750 535 aa17.24■□□□□ 0.35
CLCNKA-202ENST00000375692 TMX3Q96JJ7 454 aa17.24■□□□□ 0.35
CLCNKA-202ENST00000375692 NOL7Q9UMY1 257 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-202ENST00000375692 RNF214Q8ND24 703 aa17.23■□□□□ 0.35
CLCNKA-202ENST00000375692 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.23■□□□□ 0.35
CLCNKA-202ENST00000375692 EXOC6BQ9Y2D4 811 aa17.23■□□□□ 0.35
CLCNKA-202ENST00000375692 XIRP1Q702N8 1843 aaKnown RBP17.22■□□□□ 0.35
CLCNKA-202ENST00000375692 ZBTB7CA1YPR0 619 aa17.22■□□□□ 0.35
CLCNKA-202ENST00000375692 LRSAM1Q6UWE0 723 aa17.22■□□□□ 0.35
CLCNKA-202ENST00000375692 AMPHP49418 695 aa17.22■□□□□ 0.35
CLCNKA-202ENST00000375692 FOXD4L6Q3SYB3 417 aaPredicted RBP17.22■□□□□ 0.35
CLCNKA-202ENST00000375692 FOXD4L3Q6VB84 417 aaPredicted RBP17.22■□□□□ 0.35
CLCNKA-202ENST00000375692 HS1BP3Q53T59 392 aa17.21■□□□□ 0.35
CLCNKA-202ENST00000375692 SLAIN2Q9P270 581 aa17.21■□□□□ 0.35
CLCNKA-202ENST00000375692 PALD1Q9ULE6 856 aa17.21■□□□□ 0.35
CLCNKA-202ENST00000375692 PTPRCP08575 1304 aa17.21■□□□□ 0.35
CLCNKA-202ENST00000375692 BRINP3Q76B58 766 aa17.2■□□□□ 0.34
CLCNKA-202ENST00000375692 PDCL3Q9H2J4 239 aa17.2■□□□□ 0.34
CLCNKA-202ENST00000375692 PEAK1Q9H792 1746 aa17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 HMMRO75330 724 aa17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 LTV1Q96GA3 475 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 DCCP43146 1447 aa17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 ZNF500O60304 480 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 HAP1P54257 671 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 PKNOX2Q96KN3 472 aa17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 OSBPL3Q9H4L5 887 aa17.19■□□□□ 0.34
CLCNKA-202ENST00000375692 CABLES1Q8TDN4 633 aa17.18■□□□□ 0.34
CLCNKA-202ENST00000375692 ESYT1Q9BSJ8 1104 aa17.18■□□□□ 0.34
CLCNKA-202ENST00000375692 ZKSCAN5Q9Y2L8 839 aa17.18■□□□□ 0.34
CLCNKA-202ENST00000375692 KIAA0232Q92628 1395 aa17.18■□□□□ 0.34
CLCNKA-202ENST00000375692 MARF1Q9Y4F3 1742 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-202ENST00000375692 GCP02774 474 aa17.17■□□□□ 0.34
CLCNKA-202ENST00000375692 RILPL2Q969X0 211 aa17.17■□□□□ 0.34
CLCNKA-202ENST00000375692 BRD1O95696 1058 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms