RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 FCHSD2O94868 740 aa18.13■□□□□ 0.49
LDB3-204ENST00000372066 KCNQ4P56696 695 aa18.13■□□□□ 0.49
LDB3-204ENST00000372066 C20orf194Q5TEA3 1177 aa18.13■□□□□ 0.49
LDB3-204ENST00000372066 CENPQQ7L2Z9 268 aaPredicted RBP18.13■□□□□ 0.49
LDB3-204ENST00000372066 TMPOP42166 694 aaKnown RBP18.12■□□□□ 0.49
LDB3-204ENST00000372066 NEUROD2Q15784 382 aa18.12■□□□□ 0.49
LDB3-204ENST00000372066 RRP7AQ9Y3A4 280 aaKnown RBP18.12■□□□□ 0.49
LDB3-204ENST00000372066 NBPF6Q5VWK0 638 aa18.11■□□□□ 0.49
LDB3-204ENST00000372066 NBPF4Q96M43 638 aa18.11■□□□□ 0.49
LDB3-204ENST00000372066 TFCP2L1Q9NZI6 479 aa18.11■□□□□ 0.49
LDB3-204ENST00000372066 POLKQ9UBT6 870 aa18.11■□□□□ 0.49
LDB3-204ENST00000372066 KDM2BQ8NHM5 1336 aa18.1■□□□□ 0.49
LDB3-204ENST00000372066 NEFMP07197 916 aa18.1■□□□□ 0.49
LDB3-204ENST00000372066 SLC16A10Q8TF71 515 aa18.1■□□□□ 0.49
LDB3-204ENST00000372066 USHBP1Q8N6Y0 703 aa18.09■□□□□ 0.49
LDB3-204ENST00000372066 RARSP54136 660 aaKnown RBP18.08■□□□□ 0.49
LDB3-204ENST00000372066 RAPGEF4Q8WZA2 1011 aa18.08■□□□□ 0.49
LDB3-204ENST00000372066 KAT6BQ8WYB5 2073 aa18.08■□□□□ 0.49
LDB3-204ENST00000372066 BCAR3O75815 825 aa18.08■□□□□ 0.48
LDB3-204ENST00000372066 POLD1P28340 1107 aa18.08■□□□□ 0.48
LDB3-204ENST00000372066 KLHL34Q8N239 644 aa18.08■□□□□ 0.48
LDB3-204ENST00000372066 PNPLA7Q6ZV29 1317 aa18.07■□□□□ 0.48
LDB3-204ENST00000372066 BTAF1O14981 1849 aa18.07■□□□□ 0.48
LDB3-204ENST00000372066 CANXP27824 592 aaKnown RBP18.07■□□□□ 0.48
LDB3-204ENST00000372066 RTL1A6NKG5 1358 aa18.06■□□□□ 0.48
LDB3-204ENST00000372066 TATP17735 454 aaPredicted RBP18.06■□□□□ 0.48
LDB3-204ENST00000372066 ZNF784Q8NCA9 323 aaPredicted RBP18.06■□□□□ 0.48
LDB3-204ENST00000372066 CCNL1Q9UK58 526 aaPredicted RBP18.06■□□□□ 0.48
LDB3-204ENST00000372066 DLG5Q8TDM6 1919 aa18.05■□□□□ 0.48
LDB3-204ENST00000372066 GPR162Q16538 588 aa18.05■□□□□ 0.48
LDB3-204ENST00000372066 HSP90AB2PQ58FF8 381 aa18.05■□□□□ 0.48
LDB3-204ENST00000372066 RSPH6AQ9H0K4 717 aa18.05■□□□□ 0.48
LDB3-204ENST00000372066 PAPPAQ13219 1627 aa18.05■□□□□ 0.48
LDB3-204ENST00000372066 MEGF6O75095 1541 aa18.05■□□□□ 0.48
LDB3-204ENST00000372066 CALD1Q05682 793 aaKnown RBP18.04■□□□□ 0.48
LDB3-204ENST00000372066 TRIM35Q9UPQ4 493 aa18.04■□□□□ 0.48
LDB3-204ENST00000372066 MAP3K5Q99683 1374 aa18.04■□□□□ 0.48
LDB3-204ENST00000372066 MSH5O43196 834 aa18.04■□□□□ 0.48
LDB3-204ENST00000372066 RIPK4P57078 832 aa18.03■□□□□ 0.48
LDB3-204ENST00000372066 IL13P35225 146 aa18.02■□□□□ 0.48
LDB3-204ENST00000372066 VIRMAQ69YN4 1812 aaKnown RBP18.01■□□□□ 0.47
LDB3-204ENST00000372066 FAM208AQ9UK61 1670 aaKnown RBP18.01■□□□□ 0.47
LDB3-204ENST00000372066 PRKAR2BP31323 418 aa18■□□□□ 0.47
LDB3-204ENST00000372066 LMOD3Q0VAK6 560 aa18■□□□□ 0.47
LDB3-204ENST00000372066 ZNF428Q96B54 188 aa18■□□□□ 0.47
LDB3-204ENST00000372066 PPM1GO15355 546 aaPredicted RBP18■□□□□ 0.47
LDB3-204ENST00000372066 NFE2L2Q16236 605 aa18■□□□□ 0.47
LDB3-204ENST00000372066 COL23A1Q86Y22 540 aaPredicted RBP18■□□□□ 0.47
LDB3-204ENST00000372066 EMILIN1Q9Y6C2 1016 aa18■□□□□ 0.47
LDB3-204ENST00000372066 FLT4P35916 1363 aa17.99■□□□□ 0.47
LDB3-204ENST00000372066 ANP32AP39687 249 aaKnown RBP17.99■□□□□ 0.47
LDB3-204ENST00000372066 MPRIPQ6WCQ1 1025 aa17.99■□□□□ 0.47
LDB3-204ENST00000372066 CLUAP1Q96AJ1 413 aa17.99■□□□□ 0.47
LDB3-204ENST00000372066 PCDH11XQ9BZA7 1347 aa17.99■□□□□ 0.47
LDB3-204ENST00000372066 PCDH11YQ9BZA8 1340 aa17.99■□□□□ 0.47
LDB3-204ENST00000372066 ANP32EQ9BTT0 268 aa17.98■□□□□ 0.47
LDB3-204ENST00000372066 UTRNP46939 3433 aa17.98■□□□□ 0.47
LDB3-204ENST00000372066 ZKSCAN2Q63HK3 967 aa17.97■□□□□ 0.47
LDB3-204ENST00000372066 NLGN2Q8NFZ4 835 aa17.97■□□□□ 0.47
LDB3-204ENST00000372066 BACH2Q9BYV9 841 aa17.97■□□□□ 0.47
LDB3-204ENST00000372066 KIF24Q5T7B8 1368 aa17.97■□□□□ 0.47
LDB3-204ENST00000372066 CYP27B1O15528 508 aa17.96■□□□□ 0.47
LDB3-204ENST00000372066 HMGB2P26583 209 aaKnown RBP17.96■□□□□ 0.47
LDB3-204ENST00000372066 PDE4AP27815 886 aa17.96■□□□□ 0.47
LDB3-204ENST00000372066 FRAT1Q92837 279 aaPredicted RBP17.96■□□□□ 0.47
LDB3-204ENST00000372066 KIF16BQ96L93 1317 aa17.96■□□□□ 0.46
LDB3-204ENST00000372066 MSL1Q68DK7 614 aa17.96■□□□□ 0.46
LDB3-204ENST00000372066 EXOSC9Q06265 439 aaKnown RBP17.95■□□□□ 0.46
LDB3-204ENST00000372066 ALDH1L2Q3SY69 923 aa17.95■□□□□ 0.46
LDB3-204ENST00000372066 RGPD2P0DJD1 1756 aa17.94■□□□□ 0.46
LDB3-204ENST00000372066 PALLDQ8WX93 1383 aa17.94■□□□□ 0.46
LDB3-204ENST00000372066 SMARCC1Q92922 1105 aaPredicted RBP17.94■□□□□ 0.46
LDB3-204ENST00000372066 TSR2Q969E8 191 aaKnown RBP17.94■□□□□ 0.46
LDB3-204ENST00000372066 COG6Q9Y2V7 657 aa17.94■□□□□ 0.46
LDB3-204ENST00000372066 DOT1LQ8TEK3 1739 aa17.94■□□□□ 0.46
LDB3-204ENST00000372066 FLAD1Q8NFF5 587 aa17.93■□□□□ 0.46
LDB3-204ENST00000372066 PANK1Q8TE04 598 aa17.93■□□□□ 0.46
LDB3-204ENST00000372066 BRPF1P55201 1214 aaPredicted RBP17.92■□□□□ 0.46
LDB3-204ENST00000372066 GNAI1P63096 354 aa17.92■□□□□ 0.46
LDB3-204ENST00000372066 ERICH6Q7L0X2 663 aa17.92■□□□□ 0.46
LDB3-204ENST00000372066 SMC4Q9NTJ3 1288 aa17.92■□□□□ 0.46
LDB3-204ENST00000372066 IFT57Q9NWB7 429 aa17.92■□□□□ 0.46
LDB3-204ENST00000372066 SPG7Q9UQ90 795 aa17.92■□□□□ 0.46
LDB3-204ENST00000372066 MVPQ14764 893 aaKnown RBP17.91■□□□□ 0.46
LDB3-204ENST00000372066 DZIP1LQ8IYY4 767 aaKnown RBP17.91■□□□□ 0.46
LDB3-204ENST00000372066 PIGBQ92521 554 aa17.91■□□□□ 0.46
LDB3-204ENST00000372066 IPO8O15397 1037 aaKnown RBP17.91■□□□□ 0.46
LDB3-204ENST00000372066 GRIN3BO60391 1043 aa17.91■□□□□ 0.46
LDB3-204ENST00000372066 HMOX1P09601 288 aa17.91■□□□□ 0.46
LDB3-204ENST00000372066 AK7Q96M32 723 aa17.91■□□□□ 0.46
LDB3-204ENST00000372066 EYA1Q99502 592 aa17.91■□□□□ 0.46
LDB3-204ENST00000372066 SHANK3Q9BYB0 1731 aa17.9■□□□□ 0.46
LDB3-204ENST00000372066 C1QTNF8P60827 252 aa17.9■□□□□ 0.46
LDB3-204ENST00000372066 NKX1-1Q15270 411 aaPredicted RBP17.9■□□□□ 0.46
LDB3-204ENST00000372066 FTSJ3Q8IY81 847 aaKnown RBP17.9■□□□□ 0.46
LDB3-204ENST00000372066 LY75O60449 1722 aa17.9■□□□□ 0.46
LDB3-204ENST00000372066 YBX3P16989 372 aaKnown RBP eCLIP17.89■□□□□ 0.45
LDB3-204ENST00000372066 PHACTR3Q96KR7 559 aa17.89■□□□□ 0.45
LDB3-204ENST00000372066 IPO9Q96P70 1041 aaKnown RBP17.89■□□□□ 0.45
LDB3-204ENST00000372066 QSER1Q2KHR3 1735 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms