Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim3Q9R1R2 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim3Q9R1R2 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15□□□□□ -0.01
Trim3Q9R1R2 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Trim3Q9R1R2 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15□□□□□ -0.01
Trim3Q9R1R2 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC15□□□□□ -0.01
Trim3Q9R1R2 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim3Q9R1R2 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim3Q9R1R2 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim3Q9R1R2 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Gm27742-201ENSMUST00000184667 60 ntBASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Trim3Q9R1R2 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim3Q9R1R2 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms