Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Prpf40aQ9R1C7 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Prpf40aQ9R1C7 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Prpf40aQ9R1C7 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.51■□□□□ 0.39
Prpf40aQ9R1C7 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Prpf40aQ9R1C7 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms