Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 CT009713.7-201ENSMUST00000224689 571 ntBASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Lsm1Q8VC85 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Lsm1Q8VC85 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Mir6982-201ENSMUST00000184354 68 ntBASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Lsm1Q8VC85 Gm27528-202ENSMUST00000222916 2012 ntBASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Mir770-201ENSMUST00000103252 94 ntBASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lsm1Q8VC85 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lsm1Q8VC85 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lsm1Q8VC85 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lsm1Q8VC85 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lsm1Q8VC85 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Lsm1Q8VC85 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lsm1Q8VC85 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms