Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ccdc28aQ8CEI3 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28aQ8CEI3 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.29
Ccdc28aQ8CEI3 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28aQ8CEI3 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28aQ8CEI3 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28aQ8CEI3 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ccdc28aQ8CEI3 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.83■□□□□ 0.28
Ccdc28aQ8CEI3 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ccdc28aQ8CEI3 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ccdc28aQ8CEI3 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ccdc28aQ8CEI3 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms