Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm25406-201ENSMUST00000157599 105 ntBASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Gm6257-201ENSMUST00000163864 910 ntBASIC17.59■□□□□ 0.41
Trim9Q8C7M3 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim9Q8C7M3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim9Q8C7M3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim9Q8C7M3 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim9Q8C7M3 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim9Q8C7M3 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.58■□□□□ 0.41
Trim9Q8C7M3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim9Q8C7M3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Gm27357-201ENSMUST00000183754 135 ntBASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Gm44454-201ENSMUST00000198541 138 ntBASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim9Q8C7M3 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim9Q8C7M3 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim9Q8C7M3 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim9Q8C7M3 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms