Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm10355-201ENSMUST00000097146 517 ntBASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim47Q8C0E3 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.63■□□□□ 0.41
Trim47Q8C0E3 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Gm18622-201ENSMUST00000219361 595 ntBASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim47Q8C0E3 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim47Q8C0E3 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim47Q8C0E3 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Gm25990-201ENSMUST00000102440 86 ntBASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Gm37444-201ENSMUST00000193605 439 ntBASIC17.6■□□□□ 0.41
Trim47Q8C0E3 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim47Q8C0E3 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms