Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC19.67■□□□□ 0.74
Ddx58Q6Q899 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx58Q6Q899 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx58Q6Q899 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Ddx58Q6Q899 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Gm14140-201ENSMUST00000119999 995 ntBASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Wnt10b-206ENSMUST00000228546 2709 ntBASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Ddx58Q6Q899 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Gm8000-201ENSMUST00000188378 592 ntBASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Gm19164-201ENSMUST00000210667 640 ntBASIC19.65■□□□□ 0.74
Ddx58Q6Q899 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx58Q6Q899 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Ddx58Q6Q899 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx58Q6Q899 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx58Q6Q899 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Gm11779-201ENSMUST00000118541 368 ntBASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Haglr-201ENSMUST00000100000 2085 ntBASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx58Q6Q899 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx58Q6Q899 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx58Q6Q899 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms