Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.63■□□□□ 0.09
Col12a1Q60847 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.63■□□□□ 0.09
Col12a1Q60847 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.63■□□□□ 0.09
Col12a1Q60847 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col12a1Q60847 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.63■□□□□ 0.09
Col12a1Q60847 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Col12a1Q60847 Gm16198-201ENSMUST00000118766 670 ntBASIC15.62■□□□□ 0.09
Col12a1Q60847 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.62■□□□□ 0.09
Col12a1Q60847 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Gm43182-201ENSMUST00000199476 2528 ntBASIC15.62■□□□□ 0.09
Col12a1Q60847 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.62■□□□□ 0.09
Col12a1Q60847 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.62■□□□□ 0.09
Col12a1Q60847 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.62■□□□□ 0.09
Col12a1Q60847 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.62■□□□□ 0.09
Col12a1Q60847 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col12a1Q60847 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.61■□□□□ 0.09
Col12a1Q60847 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Gm6180-201ENSMUST00000065243 498 ntBASIC15.61■□□□□ 0.09
Col12a1Q60847 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 CT025555.1-201ENSMUST00000225901 1217 ntBASIC15.61■□□□□ 0.09
Col12a1Q60847 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.61■□□□□ 0.09
Col12a1Q60847 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Col12a1Q60847 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col12a1Q60847 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Syt7-205ENSMUST00000224135 1557 ntBASIC15.6■□□□□ 0.09
Col12a1Q60847 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC15.6■□□□□ 0.09
Col12a1Q60847 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Col12a1Q60847 Gm9063-201ENSMUST00000223299 582 ntBASIC15.6■□□□□ 0.09
Col12a1Q60847 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col12a1Q60847 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Col12a1Q60847 Gm7488-201ENSMUST00000117148 684 ntBASIC15.59■□□□□ 0.09
Col12a1Q60847 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.59■□□□□ 0.09
Col12a1Q60847 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col12a1Q60847 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col12a1Q60847 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col12a1Q60847 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col12a1Q60847 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col12a1Q60847 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col12a1Q60847 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms