Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Zkscan4-202ENSMUST00000225845 1506 ntBASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Gm21362-201ENSMUST00000194272 928 ntBASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Syne3Q4FZC9 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 AC125350.1-201ENSMUST00000225115 903 ntBASIC16.92■□□□□ 0.3
Syne3Q4FZC9 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Slc35b2-202ENSMUST00000223987 1766 ntBASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Syne3Q4FZC9 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Gm44430-201ENSMUST00000203376 995 ntBASIC16.91■□□□□ 0.3
Syne3Q4FZC9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Syne3Q4FZC9 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Gm27742-201ENSMUST00000184667 60 ntBASIC16.9■□□□□ 0.3
Syne3Q4FZC9 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Syne3Q4FZC9 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms