Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Gm28033-201ENSMUST00000184224 96 ntBASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Gm15165-201ENSMUST00000118140 502 ntBASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3bQ3ULL6 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Upf3bQ3ULL6 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3bQ3ULL6 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3bQ3ULL6 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Gm27867-201ENSMUST00000184778 125 ntBASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms