Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Sox3P53784 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sox3P53784 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Sox3P53784 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Gm18856-201ENSMUST00000178096 1374 ntBASIC15.24■□□□□ 0.03
Sox3P53784 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Sox3P53784 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Gm11336-201ENSMUST00000118168 334 ntBASIC15.24■□□□□ 0.03
Sox3P53784 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Sox3P53784 Gm24513-201ENSMUST00000174964 138 ntBASIC15.24■□□□□ 0.03
Sox3P53784 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Sox3P53784 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC15.24■□□□□ 0.03
Sox3P53784 Cmtm5-203ENSMUST00000227441 610 ntBASIC15.24■□□□□ 0.03
Sox3P53784 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Sox3P53784 AC154527.4-201ENSMUST00000224364 1667 ntBASIC15.24■□□□□ 0.03
Sox3P53784 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC15.24■□□□□ 0.03
Sox3P53784 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Sox3P53784 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox3P53784 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Sox3P53784 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Sox3P53784 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC15.23■□□□□ 0.03
Sox3P53784 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.23■□□□□ 0.03
Sox3P53784 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 AC153794.1-201ENSMUST00000169148 126 ntBASIC15.23■□□□□ 0.03
Sox3P53784 Gm27397-201ENSMUST00000184997 107 ntBASIC15.23■□□□□ 0.03
Sox3P53784 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Sox3P53784 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.23■□□□□ 0.03
Sox3P53784 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Sox3P53784 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.23■□□□□ 0.03
Sox3P53784 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Sox3P53784 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox3P53784 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Sox3P53784 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.22■□□□□ 0.03
Sox3P53784 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.22■□□□□ 0.03
Sox3P53784 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Gm4995-201ENSMUST00000117247 432 ntBASIC15.22■□□□□ 0.03
Sox3P53784 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Rprl3-201ENSMUST00000157400 290 ntBASIC15.22■□□□□ 0.03
Sox3P53784 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC15.22■□□□□ 0.03
Sox3P53784 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.22■□□□□ 0.03
Sox3P53784 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Sox3P53784 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Sox3P53784 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox3P53784 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Sox3P53784 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox3P53784 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Sox3P53784 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Sox3P53784 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.21■□□□□ 0.03
Sox3P53784 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox3P53784 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox3P53784 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms