Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.08■□□□□ 0.65
Rfx1P48377 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Rfx1P48377 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Rfx1P48377 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
Rfx1P48377 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.08■□□□□ 0.64
Rfx1P48377 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
Rfx1P48377 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Rfx1P48377 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Rfx1P48377 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.08■□□□□ 0.64
Rfx1P48377 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Rfx1P48377 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Rfx1P48377 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Rfx1P48377 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Rfx1P48377 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.07■□□□□ 0.64
Rfx1P48377 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC19.07■□□□□ 0.64
Rfx1P48377 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 Gm21814-202ENSMUST00000203277 873 ntBASIC19.07■□□□□ 0.64
Rfx1P48377 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.07■□□□□ 0.64
Rfx1P48377 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.07■□□□□ 0.64
Rfx1P48377 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Rfx1P48377 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Rfx1P48377 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.06■□□□□ 0.64
Rfx1P48377 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.06■□□□□ 0.64
Rfx1P48377 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Gm27528-202ENSMUST00000222916 2012 ntBASIC19.06■□□□□ 0.64
Rfx1P48377 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Rfx1P48377 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rfx1P48377 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Rfx1P48377 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Rfx1P48377 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
Rfx1P48377 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfx1P48377 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Rfx1P48377 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Rfx1P48377 Gm38327-201ENSMUST00000195852 1755 ntBASIC19.04■□□□□ 0.64
Rfx1P48377 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Rfx1P48377 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Gm11336-201ENSMUST00000118168 334 ntBASIC19.04■□□□□ 0.64
Rfx1P48377 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.04■□□□□ 0.64
Rfx1P48377 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.04■□□□□ 0.64
Rfx1P48377 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Rfx1P48377 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC19.04■□□□□ 0.64
Rfx1P48377 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Rfx1P48377 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfx1P48377 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfx1P48377 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms