Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.25■□□□□ 0.35
RaraP11416 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RaraP11416 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RaraP11416 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.25■□□□□ 0.35
RaraP11416 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RaraP11416 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RaraP11416 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RaraP11416 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
RaraP11416 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.25■□□□□ 0.35
RaraP11416 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RaraP11416 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RaraP11416 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RaraP11416 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.24■□□□□ 0.35
RaraP11416 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RaraP11416 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RaraP11416 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.24■□□□□ 0.35
RaraP11416 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
RaraP11416 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RaraP11416 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.23■□□□□ 0.35
RaraP11416 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Mir770-201ENSMUST00000103252 94 ntBASIC17.23■□□□□ 0.35
RaraP11416 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.23■□□□□ 0.35
RaraP11416 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.23■□□□□ 0.35
RaraP11416 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.23■□□□□ 0.35
RaraP11416 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RaraP11416 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RaraP11416 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RaraP11416 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RaraP11416 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RaraP11416 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RaraP11416 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
RaraP11416 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.22■□□□□ 0.35
RaraP11416 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
RaraP11416 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RaraP11416 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
RaraP11416 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
RaraP11416 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC17.21■□□□□ 0.35
RaraP11416 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms