Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav13d-3J3QMG8 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav13d-3J3QMG8 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav13d-3J3QMG8 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Mir3081-201ENSMUST00000175305 84 ntBASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav13d-3J3QMG8 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav13d-3J3QMG8 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Gm1818-201ENSMUST00000169406 1184 ntBASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14□□□□□ -0.17
Trav13d-3J3QMG8 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Rprl3-201ENSMUST00000157400 290 ntBASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav13d-3J3QMG8 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms