Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.25□□□□□ -2.77
LIME1Q9H400 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.25□□□□□ -2.77
LIME1Q9H400 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.25□□□□□ -2.77
LIME1Q9H400 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.25□□□□□ -2.77
LIME1Q9H400 SNORD113-3-201ENST00000364830 72 ntBASIC-2.26□□□□□ -2.77
LIME1Q9H400 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.26□□□□□ -2.77
LIME1Q9H400 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.26□□□□□ -2.77
LIME1Q9H400 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.3□□□□□ -2.78
LIME1Q9H400 MIR548AL-201ENST00000578416 97 ntBASIC-2.3□□□□□ -2.78
LIME1Q9H400 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.31□□□□□ -2.78
LIME1Q9H400 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.31□□□□□ -2.78
LIME1Q9H400 MIR548H4-201ENST00000408689 111 ntBASIC-2.32□□□□□ -2.78
LIME1Q9H400 RNU6-499P-201ENST00000365615 107 ntBASIC-2.34□□□□□ -2.78
LIME1Q9H400 MIR4317-201ENST00000637586 65 ntBASIC-2.34□□□□□ -2.78
LIME1Q9H400 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.35□□□□□ -2.79
LIME1Q9H400 RNU6-822P-201ENST00000362707 106 ntBASIC-2.37□□□□□ -2.79
LIME1Q9H400 RNU6-345P-201ENST00000517001 107 ntBASIC-2.38□□□□□ -2.79
LIME1Q9H400 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.39□□□□□ -2.79
LIME1Q9H400 RNU6-141P-201ENST00000410499 105 ntBASIC-2.39□□□□□ -2.79
LIME1Q9H400 RNY4P9-201ENST00000363194 97 ntBASIC-2.4□□□□□ -2.79
LIME1Q9H400 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.41□□□□□ -2.8
LIME1Q9H400 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.41□□□□□ -2.8
LIME1Q9H400 RNU6-838P-201ENST00000363399 108 ntBASIC-2.43□□□□□ -2.8
LIME1Q9H400 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.43□□□□□ -2.8
LIME1Q9H400 MIR1254-1-201ENST00000408257 97 ntBASIC-2.43□□□□□ -2.8
LIME1Q9H400 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.45□□□□□ -2.8
LIME1Q9H400 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.46□□□□□ -2.8
LIME1Q9H400 RNU6-808P-201ENST00000391233 108 ntBASIC-2.46□□□□□ -2.8
LIME1Q9H400 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.47□□□□□ -2.8
LIME1Q9H400 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.48□□□□□ -2.81
LIME1Q9H400 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.49□□□□□ -2.81
LIME1Q9H400 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.49□□□□□ -2.81
LIME1Q9H400 RNA5SP224-201ENST00000365069 126 ntBASIC-2.53□□□□□ -2.81
LIME1Q9H400 RNU6-936P-201ENST00000384005 107 ntBASIC-2.53□□□□□ -2.81
LIME1Q9H400 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.53□□□□□ -2.81
LIME1Q9H400 RNU6-230P-201ENST00000362457 104 ntBASIC-2.55□□□□□ -2.82
LIME1Q9H400 RNU6-753P-201ENST00000363926 107 ntBASIC-2.55□□□□□ -2.82
LIME1Q9H400 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.55□□□□□ -2.82
LIME1Q9H400 Y_RNA.345-201ENST00000365384 92 ntBASIC-2.55□□□□□ -2.82
LIME1Q9H400 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.55□□□□□ -2.82
LIME1Q9H400 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.56□□□□□ -2.82
LIME1Q9H400 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.56□□□□□ -2.82
LIME1Q9H400 RNU6-788P-201ENST00000390967 104 ntBASIC-2.56□□□□□ -2.82
LIME1Q9H400 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.57□□□□□ -2.82
LIME1Q9H400 AL731768.1-201ENST00000603124 139 ntBASIC-2.58□□□□□ -2.82
LIME1Q9H400 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.6□□□□□ -2.83
LIME1Q9H400 RNU6-1008P-201ENST00000384160 104 ntBASIC-2.61□□□□□ -2.83
LIME1Q9H400 RNU6-836P-201ENST00000362920 107 ntBASIC-2.62□□□□□ -2.83
LIME1Q9H400 RNU6-614P-201ENST00000384369 107 ntBASIC-2.62□□□□□ -2.83
LIME1Q9H400 MIR656-201ENST00000385224 78 ntBASIC-2.62□□□□□ -2.83
LIME1Q9H400 MIR548F3-201ENST00000408509 87 ntBASIC-2.62□□□□□ -2.83
LIME1Q9H400 U6.59-201ENST00000615686 107 ntBASIC-2.62□□□□□ -2.83
LIME1Q9H400 RNU6-930P-201ENST00000390938 100 ntBASIC-2.64□□□□□ -2.83
LIME1Q9H400 RNU6-59P-201ENST00000384787 107 ntBASIC-2.65□□□□□ -2.83
LIME1Q9H400 SNORD115.2-201ENST00000391126 59 ntBASIC-2.65□□□□□ -2.83
LIME1Q9H400 SNORD45C-201ENST00000383893 79 ntBASIC-2.66□□□□□ -2.84
LIME1Q9H400 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.66□□□□□ -2.84
LIME1Q9H400 RNU6-986P-201ENST00000363133 102 ntBASIC-2.67□□□□□ -2.84
LIME1Q9H400 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.68□□□□□ -2.84
LIME1Q9H400 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.68□□□□□ -2.84
LIME1Q9H400 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.72□□□□□ -2.84
LIME1Q9H400 MIR5693-201ENST00000577722 73 ntBASIC-2.72□□□□□ -2.84
LIME1Q9H400 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.75□□□□□ -2.85
LIME1Q9H400 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.76□□□□□ -2.85
LIME1Q9H400 RNY4P25-201ENST00000459254 96 ntBASIC-2.79□□□□□ -2.86
LIME1Q9H400 DLEU2_4.2-201ENST00000616613 58 ntBASIC-2.79□□□□□ -2.86
LIME1Q9H400 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.8□□□□□ -2.86
LIME1Q9H400 AL359920.1-201ENST00000618332 176 ntBASIC-2.8□□□□□ -2.86
LIME1Q9H400 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.81□□□□□ -2.86
LIME1Q9H400 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.81□□□□□ -2.86
LIME1Q9H400 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.82□□□□□ -2.86
LIME1Q9H400 RNU6-854P-201ENST00000364036 107 ntBASIC-2.84□□□□□ -2.86
LIME1Q9H400 MIR545-201ENST00000385085 106 ntBASIC-2.84□□□□□ -2.86
LIME1Q9H400 MTND4LP19-201ENST00000403051 166 ntBASIC-2.84□□□□□ -2.86
LIME1Q9H400 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.88□□□□□ -2.87
LIME1Q9H400 SNORD114-13-201ENST00000364377 74 ntBASIC-2.92□□□□□ -2.88
LIME1Q9H400 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.93□□□□□ -2.88
LIME1Q9H400 RNU6-803P-201ENST00000516034 102 ntBASIC-2.94□□□□□ -2.88
LIME1Q9H400 RNU6-737P-201ENST00000365370 107 ntBASIC-2.95□□□□□ -2.88
LIME1Q9H400 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.95□□□□□ -2.88
LIME1Q9H400 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.98□□□□□ -2.89
LIME1Q9H400 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.98□□□□□ -2.89
LIME1Q9H400 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.99□□□□□ -2.89
LIME1Q9H400 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.02□□□□□ -2.89
LIME1Q9H400 MIR509-1-201ENST00000385265 94 ntBASIC-3.07□□□□□ -2.9
LIME1Q9H400 MIR509-2-201ENST00000390724 91 ntBASIC-3.07□□□□□ -2.9
LIME1Q9H400 MIR124-1-201ENST00000385275 85 ntBASIC-3.08□□□□□ -2.9
LIME1Q9H400 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.1□□□□□ -2.91
LIME1Q9H400 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.11□□□□□ -2.91
LIME1Q9H400 SNORD115-45-201ENST00000391078 81 ntBASIC-3.11□□□□□ -2.91
LIME1Q9H400 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.14□□□□□ -2.91
LIME1Q9H400 RNA5SP106-201ENST00000517274 100 ntBASIC-3.14□□□□□ -2.91
LIME1Q9H400 RNU6-422P-201ENST00000384632 107 ntBASIC-3.17□□□□□ -2.92
LIME1Q9H400 RNU6-987P-201ENST00000384759 104 ntBASIC-3.18□□□□□ -2.92
LIME1Q9H400 MIR548AH-201ENST00000637109 76 ntBASIC-3.18□□□□□ -2.92
LIME1Q9H400 RNU4-37P-201ENST00000410214 84 ntBASIC-3.19□□□□□ -2.92
LIME1Q9H400 RNU6-1043P-201ENST00000410355 99 ntBASIC-3.2□□□□□ -2.92
LIME1Q9H400 RNY4P10-201ENST00000365571 96 ntBASIC-3.21□□□□□ -2.92
LIME1Q9H400 Y_RNA.657-201ENST00000515983 102 ntBASIC-3.24□□□□□ -2.93
LIME1Q9H400 U6.103-201ENST00000637085 61 ntBASIC-3.26□□□□□ -2.93
Retrieved 100 of 98,524 protein–RNA pairs in 1201.5 ms