Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-345P-201ENST00000517001 107 ntBASIC-1.59□□□□□ -2.66
CTCFP49711 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.6□□□□□ -2.67
CTCFP49711 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.6□□□□□ -2.67
CTCFP49711 RNY4P9-201ENST00000363194 97 ntBASIC-1.61□□□□□ -2.67
CTCFP49711 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.61□□□□□ -2.67
CTCFP49711 RNU4-33P-201ENST00000364316 85 ntBASIC-1.62□□□□□ -2.67
CTCFP49711 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.62□□□□□ -2.67
CTCFP49711 AC139453.2-201ENST00000487255 133 ntBASIC-1.62□□□□□ -2.67
CTCFP49711 MIR548AL-201ENST00000578416 97 ntBASIC-1.62□□□□□ -2.67
CTCFP49711 MIR633-201ENST00000384821 98 ntBASIC-1.63□□□□□ -2.67
CTCFP49711 MT-TM-201ENST00000387377 68 ntBASIC-1.65□□□□□ -2.67
CTCFP49711 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.65□□□□□ -2.67
CTCFP49711 RNU6-822P-201ENST00000362707 106 ntBASIC-1.66□□□□□ -2.68
CTCFP49711 MIR4317-201ENST00000637586 65 ntBASIC-1.66□□□□□ -2.68
CTCFP49711 RNA5SP224-201ENST00000365069 126 ntBASIC-1.67□□□□□ -2.68
CTCFP49711 AC079150.2-201ENST00000443733 78 ntBASIC-1.67□□□□□ -2.68
CTCFP49711 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.68□□□□□ -2.68
CTCFP49711 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.69□□□□□ -2.68
CTCFP49711 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.69□□□□□ -2.68
CTCFP49711 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.7□□□□□ -2.68
CTCFP49711 AL731768.1-201ENST00000603124 139 ntBASIC-1.7□□□□□ -2.68
CTCFP49711 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.71□□□□□ -2.68
CTCFP49711 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.71□□□□□ -2.68
CTCFP49711 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.72□□□□□ -2.68
CTCFP49711 MIR656-201ENST00000385224 78 ntBASIC-1.72□□□□□ -2.68
CTCFP49711 RNU6-808P-201ENST00000391233 108 ntBASIC-1.72□□□□□ -2.68
CTCFP49711 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.72□□□□□ -2.68
CTCFP49711 RNU6-638P-201ENST00000516582 104 ntBASIC-1.72□□□□□ -2.68
CTCFP49711 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.74□□□□□ -2.69
CTCFP49711 RNU6-838P-201ENST00000363399 108 ntBASIC-1.74□□□□□ -2.69
CTCFP49711 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.74□□□□□ -2.69
CTCFP49711 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.75□□□□□ -2.69
CTCFP49711 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.75□□□□□ -2.69
CTCFP49711 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.75□□□□□ -2.69
CTCFP49711 AC125388.1-201ENST00000459631 156 ntBASIC-1.75□□□□□ -2.69
CTCFP49711 RNU6-836P-201ENST00000362920 107 ntBASIC-1.76□□□□□ -2.69
CTCFP49711 SNORD45C-201ENST00000383893 79 ntBASIC-1.76□□□□□ -2.69
CTCFP49711 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.78□□□□□ -2.69
CTCFP49711 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.78□□□□□ -2.69
CTCFP49711 SNORD54-201ENST00000459159 67 ntBASIC-1.78□□□□□ -2.69
CTCFP49711 SNORA72.7-201ENST00000516349 94 ntBASIC-1.78□□□□□ -2.69
CTCFP49711 RNU6-854P-201ENST00000364036 107 ntBASIC-1.79□□□□□ -2.7
CTCFP49711 RNU6-499P-201ENST00000365615 107 ntBASIC-1.79□□□□□ -2.7
CTCFP49711 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.79□□□□□ -2.7
CTCFP49711 RNA5SP93-201ENST00000362525 114 ntBASIC-1.8□□□□□ -2.7
CTCFP49711 RNU6-59P-201ENST00000384787 107 ntBASIC-1.8□□□□□ -2.7
CTCFP49711 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.82□□□□□ -2.7
CTCFP49711 SNORD115.2-201ENST00000391126 59 ntBASIC-1.82□□□□□ -2.7
CTCFP49711 RNU6-986P-201ENST00000363133 102 ntBASIC-1.83□□□□□ -2.7
CTCFP49711 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.84□□□□□ -2.7
CTCFP49711 MIR548F3-201ENST00000408509 87 ntBASIC-1.84□□□□□ -2.7
CTCFP49711 AL359920.1-201ENST00000618332 176 ntBASIC-1.84□□□□□ -2.7
CTCFP49711 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.85□□□□□ -2.71
CTCFP49711 RNU6-753P-201ENST00000363926 107 ntBASIC-1.85□□□□□ -2.71
CTCFP49711 MIR5693-201ENST00000577722 73 ntBASIC-1.85□□□□□ -2.71
CTCFP49711 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.86□□□□□ -2.71
CTCFP49711 RNY4P25-201ENST00000459254 96 ntBASIC-1.86□□□□□ -2.71
CTCFP49711 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.87□□□□□ -2.71
CTCFP49711 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.87□□□□□ -2.71
CTCFP49711 RNU6-936P-201ENST00000384005 107 ntBASIC-1.88□□□□□ -2.71
CTCFP49711 RNU6-737P-201ENST00000365370 107 ntBASIC-1.89□□□□□ -2.71
CTCFP49711 RNU6-930P-201ENST00000390938 100 ntBASIC-1.9□□□□□ -2.71
CTCFP49711 RNU6-788P-201ENST00000390967 104 ntBASIC-1.9□□□□□ -2.71
CTCFP49711 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.9□□□□□ -2.71
CTCFP49711 RNU6-230P-201ENST00000362457 104 ntBASIC-1.91□□□□□ -2.72
CTCFP49711 MIR545-201ENST00000385085 106 ntBASIC-1.91□□□□□ -2.72
CTCFP49711 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.94□□□□□ -2.72
CTCFP49711 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.94□□□□□ -2.72
CTCFP49711 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.94□□□□□ -2.72
CTCFP49711 MIR124-1-201ENST00000385275 85 ntBASIC-1.95□□□□□ -2.72
CTCFP49711 SNORD114-13-201ENST00000364377 74 ntBASIC-1.97□□□□□ -2.72
CTCFP49711 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.97□□□□□ -2.72
CTCFP49711 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.98□□□□□ -2.73
CTCFP49711 RNU6-614P-201ENST00000384369 107 ntBASIC-1.99□□□□□ -2.73
CTCFP49711 SNORD115-45-201ENST00000391078 81 ntBASIC-1.99□□□□□ -2.73
CTCFP49711 U6.59-201ENST00000615686 107 ntBASIC-1.99□□□□□ -2.73
CTCFP49711 MIR548AH-201ENST00000637109 76 ntBASIC-2□□□□□ -2.73
CTCFP49711 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.01□□□□□ -2.73
CTCFP49711 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.03□□□□□ -2.73
CTCFP49711 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.05□□□□□ -2.74
CTCFP49711 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.07□□□□□ -2.74
CTCFP49711 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.08□□□□□ -2.74
CTCFP49711 RNU6-422P-201ENST00000384632 107 ntBASIC-2.1□□□□□ -2.75
CTCFP49711 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.1□□□□□ -2.75
CTCFP49711 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.11□□□□□ -2.75
CTCFP49711 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.14□□□□□ -2.75
CTCFP49711 MTND4LP19-201ENST00000403051 166 ntBASIC-2.16□□□□□ -2.76
CTCFP49711 SNORD111B-201ENST00000408587 80 ntBASIC-2.22□□□□□ -2.76
CTCFP49711 RNU6-803P-201ENST00000516034 102 ntBASIC-2.23□□□□□ -2.77
CTCFP49711 MIR509-1-201ENST00000385265 94 ntBASIC-2.24□□□□□ -2.77
CTCFP49711 MIR509-2-201ENST00000390724 91 ntBASIC-2.24□□□□□ -2.77
CTCFP49711 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.27□□□□□ -2.77
CTCFP49711 U6.103-201ENST00000637085 61 ntBASIC-2.27□□□□□ -2.77
CTCFP49711 RNU6-485P-201ENST00000363475 107 ntBASIC-2.28□□□□□ -2.77
CTCFP49711 RNU6-987P-201ENST00000384759 104 ntBASIC-2.28□□□□□ -2.77
CTCFP49711 RNA5SP106-201ENST00000517274 100 ntBASIC-2.28□□□□□ -2.77
CTCFP49711 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.3□□□□□ -2.78
CTCFP49711 RNU6-665P-201ENST00000384639 107 ntBASIC-2.31□□□□□ -2.78
CTCFP49711 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.33□□□□□ -2.78
CTCFP49711 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.34□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 1061.6 ms