Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.46□□□□□ -2.8
VCX3AQ9NNX9 MT-TR-201ENST00000387439 65 ntBASIC-2.47□□□□□ -2.8
VCX3AQ9NNX9 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.47□□□□□ -2.8
VCX3AQ9NNX9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.47□□□□□ -2.8
VCX3AQ9NNX9 SNORA25.4-201ENST00000363666 124 ntBASIC-2.48□□□□□ -2.81
VCX3AQ9NNX9 SNORD20-201ENST00000384550 80 ntBASIC-2.48□□□□□ -2.81
VCX3AQ9NNX9 RNU6-68P-201ENST00000516576 104 ntBASIC-2.48□□□□□ -2.81
VCX3AQ9NNX9 RNY4P9-201ENST00000363194 97 ntBASIC-2.49□□□□□ -2.81
VCX3AQ9NNX9 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.49□□□□□ -2.81
VCX3AQ9NNX9 RNU6-300P-201ENST00000459080 104 ntBASIC-2.49□□□□□ -2.81
VCX3AQ9NNX9 MIR3671-201ENST00000580455 88 ntBASIC-2.49□□□□□ -2.81
VCX3AQ9NNX9 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.49□□□□□ -2.81
VCX3AQ9NNX9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.5□□□□□ -2.81
VCX3AQ9NNX9 U7.4-201ENST00000614961 63 ntBASIC-2.5□□□□□ -2.81
VCX3AQ9NNX9 RNU6-912P-201ENST00000363800 104 ntBASIC-2.51□□□□□ -2.81
VCX3AQ9NNX9 RNU6-590P-201ENST00000365039 107 ntBASIC-2.51□□□□□ -2.81
VCX3AQ9NNX9 MIR450A2-201ENST00000385022 100 ntBASIC-2.51□□□□□ -2.81
VCX3AQ9NNX9 MT-TM-201ENST00000387377 68 ntBASIC-2.51□□□□□ -2.81
VCX3AQ9NNX9 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.51□□□□□ -2.81
VCX3AQ9NNX9 RNU6-176P-201ENST00000517196 105 ntBASIC-2.51□□□□□ -2.81
VCX3AQ9NNX9 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.52□□□□□ -2.81
VCX3AQ9NNX9 RNY4P30-201ENST00000410216 95 ntBASIC-2.53□□□□□ -2.81
VCX3AQ9NNX9 RNU6-787P-201ENST00000384032 107 ntBASIC-2.54□□□□□ -2.82
VCX3AQ9NNX9 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.55□□□□□ -2.82
VCX3AQ9NNX9 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.55□□□□□ -2.82
VCX3AQ9NNX9 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.55□□□□□ -2.82
VCX3AQ9NNX9 RNU6-141P-201ENST00000410499 105 ntBASIC-2.55□□□□□ -2.82
VCX3AQ9NNX9 RNU6-44P-201ENST00000384045 107 ntBASIC-2.56□□□□□ -2.82
VCX3AQ9NNX9 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.57□□□□□ -2.82
VCX3AQ9NNX9 SNORD30.1-201ENST00000391309 70 ntBASIC-2.57□□□□□ -2.82
VCX3AQ9NNX9 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.58□□□□□ -2.82
VCX3AQ9NNX9 RNU6-940P-201ENST00000363433 104 ntBASIC-2.58□□□□□ -2.82
VCX3AQ9NNX9 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.58□□□□□ -2.82
VCX3AQ9NNX9 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.59□□□□□ -2.82
VCX3AQ9NNX9 MIR1207-201ENST00000408249 87 ntBASIC-2.59□□□□□ -2.82
VCX3AQ9NNX9 RNU6-419P-201ENST00000517030 63 ntBASIC-2.59□□□□□ -2.82
VCX3AQ9NNX9 MIR4511-201ENST00000582784 87 ntBASIC-2.59□□□□□ -2.82
VCX3AQ9NNX9 RNU6-119P-201ENST00000364882 107 ntBASIC-2.6□□□□□ -2.83
VCX3AQ9NNX9 RNU6-294P-201ENST00000364999 102 ntBASIC-2.61□□□□□ -2.83
VCX3AQ9NNX9 AL606753.1-201ENST00000427435 87 ntBASIC-2.61□□□□□ -2.83
VCX3AQ9NNX9 AC103706.3-201ENST00000636297 85 ntBASIC-2.61□□□□□ -2.83
VCX3AQ9NNX9 RNU6-742P-201ENST00000365289 107 ntBASIC-2.62□□□□□ -2.83
VCX3AQ9NNX9 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.62□□□□□ -2.83
VCX3AQ9NNX9 RNU6-153P-201ENST00000364422 104 ntBASIC-2.63□□□□□ -2.83
VCX3AQ9NNX9 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.63□□□□□ -2.83
VCX3AQ9NNX9 RNU6-871P-201ENST00000516122 100 ntBASIC-2.63□□□□□ -2.83
VCX3AQ9NNX9 MIR3938-201ENST00000582157 103 ntBASIC-2.63□□□□□ -2.83
VCX3AQ9NNX9 MIR4723-201ENST00000585070 81 ntBASIC-2.63□□□□□ -2.83
VCX3AQ9NNX9 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.63□□□□□ -2.83
VCX3AQ9NNX9 MIR1254-1-201ENST00000408257 97 ntBASIC-2.64□□□□□ -2.83
VCX3AQ9NNX9 U6.111-201ENST00000636093 83 ntBASIC-2.64□□□□□ -2.83
VCX3AQ9NNX9 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.65□□□□□ -2.83
VCX3AQ9NNX9 RNU6-820P-201ENST00000384273 107 ntBASIC-2.65□□□□□ -2.83
VCX3AQ9NNX9 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.65□□□□□ -2.83
VCX3AQ9NNX9 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.66□□□□□ -2.84
VCX3AQ9NNX9 RNU6-539P-201ENST00000516665 103 ntBASIC-2.67□□□□□ -2.84
VCX3AQ9NNX9 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.69□□□□□ -2.84
VCX3AQ9NNX9 RNU6-406P-201ENST00000516470 107 ntBASIC-2.69□□□□□ -2.84
VCX3AQ9NNX9 RNU6-345P-201ENST00000517001 107 ntBASIC-2.69□□□□□ -2.84
VCX3AQ9NNX9 AC062037.1-201ENST00000605302 128 ntBASIC-2.69□□□□□ -2.84
VCX3AQ9NNX9 MIR4679-1-201ENST00000637619 75 ntBASIC-2.7□□□□□ -2.84
VCX3AQ9NNX9 MIR3202-2-201ENST00000635980 79 ntBASIC-2.73□□□□□ -2.85
VCX3AQ9NNX9 RNU6-822P-201ENST00000362707 106 ntBASIC-2.75□□□□□ -2.85
VCX3AQ9NNX9 MIR5582-201ENST00000579697 68 ntBASIC-2.75□□□□□ -2.85
VCX3AQ9NNX9 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.76□□□□□ -2.85
VCX3AQ9NNX9 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.76□□□□□ -2.85
VCX3AQ9NNX9 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.77□□□□□ -2.85
VCX3AQ9NNX9 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.77□□□□□ -2.85
VCX3AQ9NNX9 MIR496-201ENST00000385226 102 ntBASIC-2.77□□□□□ -2.85
VCX3AQ9NNX9 RNU6-800P-201ENST00000384473 103 ntBASIC-2.78□□□□□ -2.85
VCX3AQ9NNX9 AC110620.1-201ENST00000416042 228 ntBASIC-2.78□□□□□ -2.85
VCX3AQ9NNX9 RNU6-857P-201ENST00000515893 110 ntBASIC-2.78□□□□□ -2.85
VCX3AQ9NNX9 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.79□□□□□ -2.86
VCX3AQ9NNX9 MIR548X-201ENST00000580069 75 ntBASIC-2.79□□□□□ -2.86
VCX3AQ9NNX9 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.81□□□□□ -2.86
VCX3AQ9NNX9 AL731768.1-201ENST00000603124 139 ntBASIC-2.81□□□□□ -2.86
VCX3AQ9NNX9 RNU6-230P-201ENST00000362457 104 ntBASIC-2.82□□□□□ -2.86
VCX3AQ9NNX9 RNU6-279P-201ENST00000391297 101 ntBASIC-2.82□□□□□ -2.86
VCX3AQ9NNX9 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.82□□□□□ -2.86
VCX3AQ9NNX9 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.83□□□□□ -2.86
VCX3AQ9NNX9 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.83□□□□□ -2.86
VCX3AQ9NNX9 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.84□□□□□ -2.86
VCX3AQ9NNX9 AL603908.1-201ENST00000406098 201 ntBASIC-2.84□□□□□ -2.86
VCX3AQ9NNX9 SNORD54-201ENST00000459159 67 ntBASIC-2.84□□□□□ -2.86
VCX3AQ9NNX9 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.86□□□□□ -2.87
VCX3AQ9NNX9 MIR1255A-201ENST00000408338 113 ntBASIC-2.86□□□□□ -2.87
VCX3AQ9NNX9 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.87□□□□□ -2.87
VCX3AQ9NNX9 AC139453.2-201ENST00000487255 133 ntBASIC-2.87□□□□□ -2.87
VCX3AQ9NNX9 MIR4317-201ENST00000637586 65 ntBASIC-2.89□□□□□ -2.87
VCX3AQ9NNX9 RNY4P25-201ENST00000459254 96 ntBASIC-2.9□□□□□ -2.87
VCX3AQ9NNX9 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.91□□□□□ -2.88
VCX3AQ9NNX9 RNU6-1255P-201ENST00000363434 112 ntBASIC-2.91□□□□□ -2.88
VCX3AQ9NNX9 RNU6-573P-201ENST00000383938 106 ntBASIC-2.92□□□□□ -2.88
VCX3AQ9NNX9 Y_RNA.565-201ENST00000384719 101 ntBASIC-2.92□□□□□ -2.88
VCX3AQ9NNX9 SNORD73B-201ENST00000364394 72 ntBASIC-2.94□□□□□ -2.88
VCX3AQ9NNX9 Y_RNA.386-201ENST00000383913 105 ntBASIC-2.94□□□□□ -2.88
VCX3AQ9NNX9 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.95□□□□□ -2.88
VCX3AQ9NNX9 MIR5693-201ENST00000577722 73 ntBASIC-2.95□□□□□ -2.88
VCX3AQ9NNX9 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.96□□□□□ -2.88
VCX3AQ9NNX9 RNU6-446P-201ENST00000362827 106 ntBASIC-2.96□□□□□ -2.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms