Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 RNU6-940P-201ENST00000363433 104 ntBASIC-2.09□□□□□ -2.74
RPF1Q9H9Y2 RNU6-776P-201ENST00000364403 104 ntBASIC-2.09□□□□□ -2.74
RPF1Q9H9Y2 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.09□□□□□ -2.74
RPF1Q9H9Y2 RNU6-800P-201ENST00000384473 103 ntBASIC-2.09□□□□□ -2.74
RPF1Q9H9Y2 MIR548H1-201ENST00000408610 102 ntBASIC-2.09□□□□□ -2.74
RPF1Q9H9Y2 RNU7-119P-201ENST00000459279 63 ntBASIC-2.09□□□□□ -2.74
RPF1Q9H9Y2 SNORD54-201ENST00000459159 67 ntBASIC-2.1□□□□□ -2.75
RPF1Q9H9Y2 RNY4P7-201ENST00000364600 96 ntBASIC-2.11□□□□□ -2.75
RPF1Q9H9Y2 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.12□□□□□ -2.75
RPF1Q9H9Y2 RNU6-980P-201ENST00000516925 103 ntBASIC-2.12□□□□□ -2.75
RPF1Q9H9Y2 MIR3123-201ENST00000583417 75 ntBASIC-2.12□□□□□ -2.75
RPF1Q9H9Y2 MIR4662A-201ENST00000637499 67 ntBASIC-2.12□□□□□ -2.75
RPF1Q9H9Y2 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.13□□□□□ -2.75
RPF1Q9H9Y2 MIR487B-201ENST00000385021 84 ntBASIC-2.14□□□□□ -2.75
RPF1Q9H9Y2 MIR3938-201ENST00000582157 103 ntBASIC-2.14□□□□□ -2.75
RPF1Q9H9Y2 MIR466-201ENST00000580653 84 ntBASIC-2.15□□□□□ -2.75
RPF1Q9H9Y2 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.16□□□□□ -2.76
RPF1Q9H9Y2 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.16□□□□□ -2.76
RPF1Q9H9Y2 MIR202-201ENST00000362219 110 ntBASIC-2.17□□□□□ -2.76
RPF1Q9H9Y2 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.17□□□□□ -2.76
RPF1Q9H9Y2 MIR664B-201ENST00000626756 61 ntBASIC-2.17□□□□□ -2.76
RPF1Q9H9Y2 AC110620.1-201ENST00000416042 228 ntBASIC-2.19□□□□□ -2.76
RPF1Q9H9Y2 AC108019.1-201ENST00000512540 175 ntBASIC-2.19□□□□□ -2.76
RPF1Q9H9Y2 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.19□□□□□ -2.76
RPF1Q9H9Y2 RNA5SP93-201ENST00000362525 114 ntBASIC-2.2□□□□□ -2.76
RPF1Q9H9Y2 RNU6-841P-201ENST00000383872 107 ntBASIC-2.2□□□□□ -2.76
RPF1Q9H9Y2 Y_RNA.386-201ENST00000383913 105 ntBASIC-2.2□□□□□ -2.76
RPF1Q9H9Y2 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.2□□□□□ -2.76
RPF1Q9H9Y2 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.21□□□□□ -2.76
RPF1Q9H9Y2 MIR581-201ENST00000384895 96 ntBASIC-2.22□□□□□ -2.76
RPF1Q9H9Y2 RNU6-530P-201ENST00000391180 107 ntBASIC-2.22□□□□□ -2.76
RPF1Q9H9Y2 SNORD60-201ENST00000383903 83 ntBASIC-2.23□□□□□ -2.77
RPF1Q9H9Y2 AL451105.1-201ENST00000450005 189 ntBASIC-2.23□□□□□ -2.77
RPF1Q9H9Y2 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.24□□□□□ -2.77
RPF1Q9H9Y2 RNU6-361P-201ENST00000364454 107 ntBASIC-2.24□□□□□ -2.77
RPF1Q9H9Y2 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.24□□□□□ -2.77
RPF1Q9H9Y2 MIR3139-201ENST00000579145 76 ntBASIC-2.24□□□□□ -2.77
RPF1Q9H9Y2 SNORD18C-201ENST00000362704 69 ntBASIC-2.25□□□□□ -2.77
RPF1Q9H9Y2 SNORA17.4-201ENST00000391287 132 ntBASIC-2.25□□□□□ -2.77
RPF1Q9H9Y2 MIR548N-201ENST00000408742 75 ntBASIC-2.25□□□□□ -2.77
RPF1Q9H9Y2 MIR4756-201ENST00000577874 78 ntBASIC-2.25□□□□□ -2.77
RPF1Q9H9Y2 MIR548AM-201ENST00000584298 74 ntBASIC-2.25□□□□□ -2.77
RPF1Q9H9Y2 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.27□□□□□ -2.77
RPF1Q9H9Y2 SNORD45.2-201ENST00000363552 72 ntBASIC-2.28□□□□□ -2.77
RPF1Q9H9Y2 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.28□□□□□ -2.77
RPF1Q9H9Y2 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.28□□□□□ -2.77
RPF1Q9H9Y2 RNU6-471P-201ENST00000383944 106 ntBASIC-2.3□□□□□ -2.78
RPF1Q9H9Y2 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.3□□□□□ -2.78
RPF1Q9H9Y2 AC114801.3-201ENST00000510231 177 ntBASIC-2.3□□□□□ -2.78
RPF1Q9H9Y2 RNU6-419P-201ENST00000517030 63 ntBASIC-2.3□□□□□ -2.78
RPF1Q9H9Y2 MT-TM-201ENST00000387377 68 ntBASIC-2.32□□□□□ -2.78
RPF1Q9H9Y2 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.34□□□□□ -2.78
RPF1Q9H9Y2 RNA5SP405-201ENST00000363059 114 ntBASIC-2.34□□□□□ -2.78
RPF1Q9H9Y2 MIR4426-201ENST00000640330 63 ntBASIC-2.34□□□□□ -2.78
RPF1Q9H9Y2 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.35□□□□□ -2.79
RPF1Q9H9Y2 snoU13.10-201ENST00000459301 103 ntBASIC-2.35□□□□□ -2.79
RPF1Q9H9Y2 RNY4-201ENST00000516507 96 ntBASIC-2.35□□□□□ -2.79
RPF1Q9H9Y2 MIR548W-201ENST00000581970 74 ntBASIC-2.35□□□□□ -2.79
RPF1Q9H9Y2 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.37□□□□□ -2.79
RPF1Q9H9Y2 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.38□□□□□ -2.79
RPF1Q9H9Y2 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.38□□□□□ -2.79
RPF1Q9H9Y2 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.38□□□□□ -2.79
RPF1Q9H9Y2 RNU4-88P-201ENST00000411220 86 ntBASIC-2.4□□□□□ -2.79
RPF1Q9H9Y2 RNU6-446P-201ENST00000362827 106 ntBASIC-2.42□□□□□ -2.8
RPF1Q9H9Y2 RNU6-742P-201ENST00000365289 107 ntBASIC-2.43□□□□□ -2.8
RPF1Q9H9Y2 RNU6-300P-201ENST00000459080 104 ntBASIC-2.43□□□□□ -2.8
RPF1Q9H9Y2 RNU6-590P-201ENST00000365039 107 ntBASIC-2.45□□□□□ -2.8
RPF1Q9H9Y2 RNU6-68P-201ENST00000516576 104 ntBASIC-2.45□□□□□ -2.8
RPF1Q9H9Y2 MIR548X-201ENST00000580069 75 ntBASIC-2.45□□□□□ -2.8
RPF1Q9H9Y2 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.47□□□□□ -2.8
RPF1Q9H9Y2 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.47□□□□□ -2.8
RPF1Q9H9Y2 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.48□□□□□ -2.81
RPF1Q9H9Y2 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.48□□□□□ -2.81
RPF1Q9H9Y2 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.48□□□□□ -2.81
RPF1Q9H9Y2 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.49□□□□□ -2.81
RPF1Q9H9Y2 RNU6-176P-201ENST00000517196 105 ntBASIC-2.49□□□□□ -2.81
RPF1Q9H9Y2 RNU6-194P-201ENST00000363862 105 ntBASIC-2.5□□□□□ -2.81
RPF1Q9H9Y2 MIR379-201ENST00000362218 67 ntBASIC-2.51□□□□□ -2.81
RPF1Q9H9Y2 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.51□□□□□ -2.81
RPF1Q9H9Y2 SNORA72.7-201ENST00000516349 94 ntBASIC-2.53□□□□□ -2.81
RPF1Q9H9Y2 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.53□□□□□ -2.81
RPF1Q9H9Y2 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.54□□□□□ -2.82
RPF1Q9H9Y2 RNU6-912P-201ENST00000363800 104 ntBASIC-2.54□□□□□ -2.82
RPF1Q9H9Y2 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.54□□□□□ -2.82
RPF1Q9H9Y2 SNORD113-4-201ENST00000364802 75 ntBASIC-2.56□□□□□ -2.82
RPF1Q9H9Y2 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.56□□□□□ -2.82
RPF1Q9H9Y2 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.57□□□□□ -2.82
RPF1Q9H9Y2 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.57□□□□□ -2.82
RPF1Q9H9Y2 AC097484.2-201ENST00000509147 251 ntBASIC-2.57□□□□□ -2.82
RPF1Q9H9Y2 MIR633-201ENST00000384821 98 ntBASIC-2.58□□□□□ -2.82
RPF1Q9H9Y2 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.59□□□□□ -2.82
RPF1Q9H9Y2 RNU6-638P-201ENST00000516582 104 ntBASIC-2.59□□□□□ -2.82
RPF1Q9H9Y2 RNU6-829P-201ENST00000363700 112 ntBASIC-2.6□□□□□ -2.83
RPF1Q9H9Y2 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.6□□□□□ -2.83
RPF1Q9H9Y2 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.6□□□□□ -2.83
RPF1Q9H9Y2 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.63□□□□□ -2.83
RPF1Q9H9Y2 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.63□□□□□ -2.83
RPF1Q9H9Y2 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.63□□□□□ -2.83
RPF1Q9H9Y2 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.63□□□□□ -2.83
RPF1Q9H9Y2 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.63□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 207.5 ms