Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 RNU6-141P-201ENST00000410499 105 ntBASIC-2.6□□□□□ -2.83
ZNF404Q494X3 AL451105.1-201ENST00000450005 189 ntBASIC-2.6□□□□□ -2.83
ZNF404Q494X3 RNU7-119P-201ENST00000459279 63 ntBASIC-2.6□□□□□ -2.83
ZNF404Q494X3 MIR4666B-201ENST00000578142 81 ntBASIC-2.6□□□□□ -2.83
ZNF404Q494X3 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.61□□□□□ -2.83
ZNF404Q494X3 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.61□□□□□ -2.83
ZNF404Q494X3 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.61□□□□□ -2.83
ZNF404Q494X3 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.61□□□□□ -2.83
ZNF404Q494X3 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.61□□□□□ -2.83
ZNF404Q494X3 MIR4426-201ENST00000640330 63 ntBASIC-2.61□□□□□ -2.83
ZNF404Q494X3 RNU6-242P-201ENST00000384359 107 ntBASIC-2.62□□□□□ -2.83
ZNF404Q494X3 RNU6-68P-201ENST00000516576 104 ntBASIC-2.62□□□□□ -2.83
ZNF404Q494X3 RNU6-176P-201ENST00000517196 105 ntBASIC-2.62□□□□□ -2.83
ZNF404Q494X3 SNORD113-3-201ENST00000364830 72 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 SNORD113-1-201ENST00000365321 69 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 RNU6-634P-201ENST00000459134 106 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 RNU6-919P-201ENST00000516731 104 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 MIR3668-201ENST00000582138 75 ntBASIC-2.63□□□□□ -2.83
ZNF404Q494X3 RNU6-230P-201ENST00000362457 104 ntBASIC-2.64□□□□□ -2.83
ZNF404Q494X3 RNU6-215P-201ENST00000365169 102 ntBASIC-2.64□□□□□ -2.83
ZNF404Q494X3 RNU6-663P-201ENST00000391105 106 ntBASIC-2.64□□□□□ -2.83
ZNF404Q494X3 MIR3910-1-201ENST00000580936 111 ntBASIC-2.64□□□□□ -2.83
ZNF404Q494X3 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.64□□□□□ -2.83
ZNF404Q494X3 RNU6-912P-201ENST00000363800 104 ntBASIC-2.65□□□□□ -2.83
ZNF404Q494X3 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.65□□□□□ -2.83
ZNF404Q494X3 RNU6-590P-201ENST00000365039 107 ntBASIC-2.66□□□□□ -2.84
ZNF404Q494X3 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.66□□□□□ -2.84
ZNF404Q494X3 RNU6-300P-201ENST00000459080 104 ntBASIC-2.66□□□□□ -2.84
ZNF404Q494X3 U7.4-201ENST00000614961 63 ntBASIC-2.66□□□□□ -2.84
ZNF404Q494X3 SNORA25.4-201ENST00000363666 124 ntBASIC-2.67□□□□□ -2.84
ZNF404Q494X3 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.67□□□□□ -2.84
ZNF404Q494X3 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.67□□□□□ -2.84
ZNF404Q494X3 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.68□□□□□ -2.84
ZNF404Q494X3 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.68□□□□□ -2.84
ZNF404Q494X3 RNY4P7-201ENST00000364600 96 ntBASIC-2.68□□□□□ -2.84
ZNF404Q494X3 RNA5SP89-201ENST00000410300 108 ntBASIC-2.68□□□□□ -2.84
ZNF404Q494X3 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.68□□□□□ -2.84
ZNF404Q494X3 MIR494-201ENST00000349529 81 ntBASIC-2.69□□□□□ -2.84
ZNF404Q494X3 SNORD20-201ENST00000384550 80 ntBASIC-2.69□□□□□ -2.84
ZNF404Q494X3 MIR450A2-201ENST00000385022 100 ntBASIC-2.69□□□□□ -2.84
ZNF404Q494X3 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.7□□□□□ -2.84
ZNF404Q494X3 MIR3671-201ENST00000580455 88 ntBASIC-2.7□□□□□ -2.84
ZNF404Q494X3 RNU6-787P-201ENST00000384032 107 ntBASIC-2.71□□□□□ -2.84
ZNF404Q494X3 MT-TR-201ENST00000387439 65 ntBASIC-2.73□□□□□ -2.85
ZNF404Q494X3 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.73□□□□□ -2.85
ZNF404Q494X3 RNU6-940P-201ENST00000363433 104 ntBASIC-2.74□□□□□ -2.85
ZNF404Q494X3 RNY4P30-201ENST00000410216 95 ntBASIC-2.74□□□□□ -2.85
ZNF404Q494X3 RNU6-419P-201ENST00000517030 63 ntBASIC-2.74□□□□□ -2.85
ZNF404Q494X3 MIR4511-201ENST00000582784 87 ntBASIC-2.75□□□□□ -2.85
ZNF404Q494X3 SNORD30.1-201ENST00000391309 70 ntBASIC-2.77□□□□□ -2.85
ZNF404Q494X3 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.78□□□□□ -2.85
ZNF404Q494X3 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.78□□□□□ -2.85
ZNF404Q494X3 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.78□□□□□ -2.85
ZNF404Q494X3 MIR3938-201ENST00000582157 103 ntBASIC-2.78□□□□□ -2.85
ZNF404Q494X3 AC103706.3-201ENST00000636297 85 ntBASIC-2.78□□□□□ -2.85
ZNF404Q494X3 RNU6-44P-201ENST00000384045 107 ntBASIC-2.79□□□□□ -2.86
ZNF404Q494X3 RNU6-742P-201ENST00000365289 107 ntBASIC-2.8□□□□□ -2.86
ZNF404Q494X3 RNU6-820P-201ENST00000384273 107 ntBASIC-2.8□□□□□ -2.86
ZNF404Q494X3 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.8□□□□□ -2.86
ZNF404Q494X3 RNU6-294P-201ENST00000364999 102 ntBASIC-2.81□□□□□ -2.86
ZNF404Q494X3 AL606753.1-201ENST00000427435 87 ntBASIC-2.81□□□□□ -2.86
ZNF404Q494X3 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.82□□□□□ -2.86
ZNF404Q494X3 RNU6-871P-201ENST00000516122 100 ntBASIC-2.82□□□□□ -2.86
ZNF404Q494X3 RNU6-345P-201ENST00000517001 107 ntBASIC-2.82□□□□□ -2.86
ZNF404Q494X3 RNU6-153P-201ENST00000364422 104 ntBASIC-2.83□□□□□ -2.86
ZNF404Q494X3 RNY4-201ENST00000516507 96 ntBASIC-2.83□□□□□ -2.86
ZNF404Q494X3 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.83□□□□□ -2.86
ZNF404Q494X3 MIR1254-1-201ENST00000408257 97 ntBASIC-2.84□□□□□ -2.86
ZNF404Q494X3 U6.111-201ENST00000636093 83 ntBASIC-2.84□□□□□ -2.86
ZNF404Q494X3 RNU6-539P-201ENST00000516665 103 ntBASIC-2.85□□□□□ -2.87
ZNF404Q494X3 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.85□□□□□ -2.87
ZNF404Q494X3 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.86□□□□□ -2.87
ZNF404Q494X3 MIR5693-201ENST00000577722 73 ntBASIC-2.88□□□□□ -2.87
ZNF404Q494X3 MIR4679-1-201ENST00000637619 75 ntBASIC-2.88□□□□□ -2.87
ZNF404Q494X3 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.89□□□□□ -2.87
ZNF404Q494X3 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.89□□□□□ -2.87
ZNF404Q494X3 RNY4P25-201ENST00000459254 96 ntBASIC-2.91□□□□□ -2.88
ZNF404Q494X3 RNU6-406P-201ENST00000516470 107 ntBASIC-2.91□□□□□ -2.88
ZNF404Q494X3 AL731768.1-201ENST00000603124 139 ntBASIC-2.91□□□□□ -2.88
ZNF404Q494X3 AC062037.1-201ENST00000605302 128 ntBASIC-2.92□□□□□ -2.88
ZNF404Q494X3 RNU6-822P-201ENST00000362707 106 ntBASIC-2.93□□□□□ -2.88
ZNF404Q494X3 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.94□□□□□ -2.88
ZNF404Q494X3 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.94□□□□□ -2.88
ZNF404Q494X3 MIR548X-201ENST00000580069 75 ntBASIC-2.94□□□□□ -2.88
ZNF404Q494X3 MIR3202-2-201ENST00000635980 79 ntBASIC-2.94□□□□□ -2.88
ZNF404Q494X3 AC110620.1-201ENST00000416042 228 ntBASIC-2.95□□□□□ -2.88
ZNF404Q494X3 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.97□□□□□ -2.88
ZNF404Q494X3 RNU6-800P-201ENST00000384473 103 ntBASIC-2.97□□□□□ -2.88
ZNF404Q494X3 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.97□□□□□ -2.88
ZNF404Q494X3 MIR5582-201ENST00000579697 68 ntBASIC-2.97□□□□□ -2.88
ZNF404Q494X3 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.98□□□□□ -2.89
ZNF404Q494X3 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.99□□□□□ -2.89
ZNF404Q494X3 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.99□□□□□ -2.89
ZNF404Q494X3 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.99□□□□□ -2.89
ZNF404Q494X3 Y_RNA.63-201ENST00000362841 102 ntBASIC-3□□□□□ -2.89
ZNF404Q494X3 Y_RNA.134-201ENST00000363435 105 ntBASIC-3□□□□□ -2.89
ZNF404Q494X3 RNU6-857P-201ENST00000515893 110 ntBASIC-3□□□□□ -2.89
ZNF404Q494X3 RNU6-803P-201ENST00000516034 102 ntBASIC-3.01□□□□□ -2.89
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms