Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.94□□□□□ -2.56
RNF4P78317 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.94□□□□□ -2.56
RNF4P78317 RNU6-576P-201ENST00000390854 102 ntBASIC-0.95□□□□□ -2.56
RNF4P78317 U6.97-201ENST00000636904 101 ntBASIC-0.95□□□□□ -2.56
RNF4P78317 SNORD60-201ENST00000383903 83 ntBASIC-0.96□□□□□ -2.56
RNF4P78317 RNU6-300P-201ENST00000459080 104 ntBASIC-0.96□□□□□ -2.56
RNF4P78317 MIR6738-201ENST00000619620 64 ntBASIC-0.96□□□□□ -2.56
RNF4P78317 RNU6-79P-201ENST00000362511 107 ntBASIC-0.97□□□□□ -2.56
RNF4P78317 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.98□□□□□ -2.57
RNF4P78317 RNU6-10P-201ENST00000384036 107 ntBASIC-0.99□□□□□ -2.57
RNF4P78317 MIR3115-201ENST00000577915 68 ntBASIC-0.99□□□□□ -2.57
RNF4P78317 MIR6502-201ENST00000617296 76 ntBASIC-0.99□□□□□ -2.57
RNF4P78317 MIR545-201ENST00000385085 106 ntBASIC-1□□□□□ -2.57
RNF4P78317 RNU6-986P-201ENST00000363133 102 ntBASIC-1.01□□□□□ -2.57
RNF4P78317 SNX3P1X-201ENST00000414887 175 ntBASIC-1.02□□□□□ -2.57
RNF4P78317 RNU6-706P-201ENST00000517229 104 ntBASIC-1.02□□□□□ -2.57
RNF4P78317 MIR4320-201ENST00000636981 65 ntBASIC-1.02□□□□□ -2.57
RNF4P78317 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.04□□□□□ -2.58
RNF4P78317 MIR548N-201ENST00000408742 75 ntBASIC-1.04□□□□□ -2.58
RNF4P78317 MIR3165-201ENST00000579874 75 ntBASIC-1.06□□□□□ -2.58
RNF4P78317 MIR4520-1-201ENST00000582609 70 ntBASIC-1.06□□□□□ -2.58
RNF4P78317 MIR548H4-201ENST00000408689 111 ntBASIC-1.07□□□□□ -2.58
RNF4P78317 AC138207.3-201ENST00000585289 166 ntBASIC-1.07□□□□□ -2.58
RNF4P78317 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.07□□□□□ -2.58
RNF4P78317 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.08□□□□□ -2.58
RNF4P78317 MIR581-201ENST00000384895 96 ntBASIC-1.08□□□□□ -2.58
RNF4P78317 HLA-S-202ENST00000425174 53 ntBASIC-1.08□□□□□ -2.58
RNF4P78317 MIR5591-201ENST00000578248 65 ntBASIC-1.08□□□□□ -2.58
RNF4P78317 MIR4317-201ENST00000637586 65 ntBASIC-1.08□□□□□ -2.58
RNF4P78317 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.09□□□□□ -2.58
RNF4P78317 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.09□□□□□ -2.58
RNF4P78317 RNU6-176P-201ENST00000517196 105 ntBASIC-1.09□□□□□ -2.58
RNF4P78317 RNU6-400P-201ENST00000391173 106 ntBASIC-1.1□□□□□ -2.59
RNF4P78317 MIR198-201ENST00000637333 62 ntBASIC-1.1□□□□□ -2.59
RNF4P78317 MIR601-201ENST00000385256 79 ntBASIC-1.13□□□□□ -2.59
RNF4P78317 MIR4770-201ENST00000579149 58 ntBASIC-1.13□□□□□ -2.59
RNF4P78317 RNU6-226P-201ENST00000363778 107 ntBASIC-1.14□□□□□ -2.59
RNF4P78317 MIR487B-201ENST00000385021 84 ntBASIC-1.14□□□□□ -2.59
RNF4P78317 RNA5SP86-201ENST00000390869 98 ntBASIC-1.14□□□□□ -2.59
RNF4P78317 RNU6-695P-201ENST00000391157 104 ntBASIC-1.14□□□□□ -2.59
RNF4P78317 RNU6-822P-201ENST00000362707 106 ntBASIC-1.15□□□□□ -2.59
RNF4P78317 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.15□□□□□ -2.59
RNF4P78317 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.16□□□□□ -2.6
RNF4P78317 SNORD18C-201ENST00000362704 69 ntBASIC-1.17□□□□□ -2.6
RNF4P78317 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.17□□□□□ -2.6
RNF4P78317 MIR3123-201ENST00000583417 75 ntBASIC-1.17□□□□□ -2.6
RNF4P78317 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.18□□□□□ -2.6
RNF4P78317 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.18□□□□□ -2.6
RNF4P78317 RNA5SP461-201ENST00000516451 104 ntBASIC-1.2□□□□□ -2.6
RNF4P78317 RNU6-68P-201ENST00000516576 104 ntBASIC-1.21□□□□□ -2.6
RNF4P78317 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.22□□□□□ -2.6
RNF4P78317 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.24□□□□□ -2.61
RNF4P78317 MIR548H1-201ENST00000408610 102 ntBASIC-1.24□□□□□ -2.61
RNF4P78317 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.24□□□□□ -2.61
RNF4P78317 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.24□□□□□ -2.61
RNF4P78317 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.25□□□□□ -2.61
RNF4P78317 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.25□□□□□ -2.61
RNF4P78317 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.25□□□□□ -2.61
RNF4P78317 MIR548W-201ENST00000581970 74 ntBASIC-1.25□□□□□ -2.61
RNF4P78317 RNU6-841P-201ENST00000383872 107 ntBASIC-1.27□□□□□ -2.61
RNF4P78317 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.27□□□□□ -2.61
RNF4P78317 snoU13.10-201ENST00000459301 103 ntBASIC-1.27□□□□□ -2.61
RNF4P78317 MIR548AM-201ENST00000584298 74 ntBASIC-1.27□□□□□ -2.61
RNF4P78317 RNU6-59P-201ENST00000384787 107 ntBASIC-1.28□□□□□ -2.61
RNF4P78317 MIR4723-201ENST00000585070 81 ntBASIC-1.28□□□□□ -2.61
RNF4P78317 MIR379-201ENST00000362218 67 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 MIR1246-201ENST00000636535 73 ntBASIC-1.31□□□□□ -2.62
RNF4P78317 SNORD18.1-201ENST00000363807 70 ntBASIC-1.32□□□□□ -2.62
RNF4P78317 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.32□□□□□ -2.62
RNF4P78317 AC108019.1-201ENST00000512540 175 ntBASIC-1.32□□□□□ -2.62
RNF4P78317 RNA5SP180-201ENST00000516181 101 ntBASIC-1.32□□□□□ -2.62
RNF4P78317 U4.2-201ENST00000618561 85 ntBASIC-1.32□□□□□ -2.62
RNF4P78317 MIR365A-201ENST00000362260 87 ntBASIC-1.33□□□□□ -2.62
RNF4P78317 MIR4756-201ENST00000577874 78 ntBASIC-1.33□□□□□ -2.62
RNF4P78317 MIR1285-2-201ENST00000408311 88 ntBASIC-1.34□□□□□ -2.62
RNF4P78317 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.34□□□□□ -2.62
RNF4P78317 RNU6-912P-201ENST00000363800 104 ntBASIC-1.35□□□□□ -2.63
RNF4P78317 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.36□□□□□ -2.63
RNF4P78317 RNU6-983P-201ENST00000516004 103 ntBASIC-1.36□□□□□ -2.63
RNF4P78317 SNORD114-3-201ENST00000364969 75 ntBASIC-1.37□□□□□ -2.63
RNF4P78317 MIR4441-201ENST00000582623 100 ntBASIC-1.37□□□□□ -2.63
RNF4P78317 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.38□□□□□ -2.63
RNF4P78317 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.38□□□□□ -2.63
RNF4P78317 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.39□□□□□ -2.63
RNF4P78317 SNORD113-3-201ENST00000364830 72 ntBASIC-1.41□□□□□ -2.64
RNF4P78317 SNORD115.2-201ENST00000391126 59 ntBASIC-1.43□□□□□ -2.64
RNF4P78317 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.43□□□□□ -2.64
RNF4P78317 MIR1207-201ENST00000408249 87 ntBASIC-1.44□□□□□ -2.64
RNF4P78317 MIR664B-201ENST00000626756 61 ntBASIC-1.44□□□□□ -2.64
RNF4P78317 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.45□□□□□ -2.64
RNF4P78317 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.45□□□□□ -2.64
RNF4P78317 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.45□□□□□ -2.64
RNF4P78317 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.45□□□□□ -2.64
RNF4P78317 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.46□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 288.4 ms