Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL731768.1-201ENST00000603124 139 ntBASIC-3.73□□□□□ -3.01
LIMS3P0CW19 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.74□□□□□ -3.01
LIMS3P0CW19 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.74□□□□□ -3.01
LIMS3P0CW19 Y_RNA.593-201ENST00000410292 98 ntBASIC-3.74□□□□□ -3.01
LIMS3P0CW19 RNY4P25-201ENST00000459254 96 ntBASIC-3.74□□□□□ -3.01
LIMS3P0CW19 MIR1245B-201ENST00000636115 69 ntBASIC-3.74□□□□□ -3.01
LIMS3P0CW19 AC090425.1-201ENST00000610007 140 ntBASIC-3.75□□□□□ -3.01
LIMS3P0CW19 MIR4426-201ENST00000640330 63 ntBASIC-3.75□□□□□ -3.01
LIMS3P0CW19 RNU6-979P-201ENST00000383896 107 ntBASIC-3.76□□□□□ -3.01
LIMS3P0CW19 RNU6-176P-201ENST00000517196 105 ntBASIC-3.76□□□□□ -3.01
LIMS3P0CW19 RNU6-22P-201ENST00000384355 107 ntBASIC-3.77□□□□□ -3.01
LIMS3P0CW19 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.78□□□□□ -3.01
LIMS3P0CW19 RNU6-687P-201ENST00000516443 89 ntBASIC-3.78□□□□□ -3.01
LIMS3P0CW19 RNU6-794P-201ENST00000517261 64 ntBASIC-3.78□□□□□ -3.01
LIMS3P0CW19 AL451105.1-201ENST00000450005 189 ntBASIC-3.8□□□□□ -3.02
LIMS3P0CW19 RNU7-119P-201ENST00000459279 63 ntBASIC-3.8□□□□□ -3.02
LIMS3P0CW19 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.81□□□□□ -3.02
LIMS3P0CW19 RNU6-1117P-201ENST00000384525 104 ntBASIC-3.81□□□□□ -3.02
LIMS3P0CW19 RNU6-300P-201ENST00000459080 104 ntBASIC-3.81□□□□□ -3.02
LIMS3P0CW19 RNU7-171P-201ENST00000459581 62 ntBASIC-3.81□□□□□ -3.02
LIMS3P0CW19 MIR3134-201ENST00000579433 74 ntBASIC-3.81□□□□□ -3.02
LIMS3P0CW19 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.81□□□□□ -3.02
LIMS3P0CW19 Y_RNA.134-201ENST00000363435 105 ntBASIC-3.82□□□□□ -3.02
LIMS3P0CW19 MIR4719-201ENST00000585233 84 ntBASIC-3.82□□□□□ -3.02
LIMS3P0CW19 RNU6-590P-201ENST00000365039 107 ntBASIC-3.83□□□□□ -3.02
LIMS3P0CW19 RNU6-209P-201ENST00000384118 107 ntBASIC-3.83□□□□□ -3.02
LIMS3P0CW19 RNU6-1154P-201ENST00000391001 104 ntBASIC-3.83□□□□□ -3.02
LIMS3P0CW19 MIRLET7A3-201ENST00000362116 74 ntBASIC-3.84□□□□□ -3.02
LIMS3P0CW19 MIR1254-1-201ENST00000408257 97 ntBASIC-3.84□□□□□ -3.02
LIMS3P0CW19 RNU6-122P-201ENST00000516818 107 ntBASIC-3.84□□□□□ -3.02
LIMS3P0CW19 SNORA40.16-201ENST00000517238 121 ntBASIC-3.84□□□□□ -3.02
LIMS3P0CW19 Y_RNA.788-201ENST00000622394 112 ntBASIC-3.84□□□□□ -3.02
LIMS3P0CW19 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.85□□□□□ -3.03
LIMS3P0CW19 RNU6-313P-201ENST00000516317 112 ntBASIC-3.86□□□□□ -3.03
LIMS3P0CW19 AC099654.10-201ENST00000640395 161 ntBASIC-3.86□□□□□ -3.03
LIMS3P0CW19 SNORA25.5-201ENST00000363782 126 ntBASIC-3.87□□□□□ -3.03
LIMS3P0CW19 RNU6-411P-201ENST00000384451 107 ntBASIC-3.87□□□□□ -3.03
LIMS3P0CW19 Y_RNA.63-201ENST00000362841 102 ntBASIC-3.89□□□□□ -3.03
LIMS3P0CW19 Y_RNA.94-201ENST00000363068 106 ntBASIC-3.91□□□□□ -3.04
LIMS3P0CW19 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.91□□□□□ -3.04
LIMS3P0CW19 RNU6-147P-201ENST00000383983 107 ntBASIC-3.93□□□□□ -3.04
LIMS3P0CW19 RNU6-345P-201ENST00000517001 107 ntBASIC-3.93□□□□□ -3.04
LIMS3P0CW19 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.94□□□□□ -3.04
LIMS3P0CW19 Y_RNA.612-201ENST00000410717 95 ntBASIC-3.94□□□□□ -3.04
LIMS3P0CW19 RNU6-1131P-201ENST00000364955 107 ntBASIC-3.95□□□□□ -3.04
LIMS3P0CW19 RNU6-663P-201ENST00000391105 106 ntBASIC-3.95□□□□□ -3.04
LIMS3P0CW19 RNU6-1015P-201ENST00000517121 99 ntBASIC-3.95□□□□□ -3.04
LIMS3P0CW19 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.96□□□□□ -3.04
LIMS3P0CW19 RNU6-242P-201ENST00000384359 107 ntBASIC-3.96□□□□□ -3.04
LIMS3P0CW19 RNU6-800P-201ENST00000384473 103 ntBASIC-3.96□□□□□ -3.04
LIMS3P0CW19 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.97□□□□□ -3.04
LIMS3P0CW19 RNU6-49P-201ENST00000384256 107 ntBASIC-3.98□□□□□ -3.05
LIMS3P0CW19 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.98□□□□□ -3.05
LIMS3P0CW19 SNORA25.4-201ENST00000363666 124 ntBASIC-3.99□□□□□ -3.05
LIMS3P0CW19 RNU6-634P-201ENST00000459134 106 ntBASIC-3.99□□□□□ -3.05
LIMS3P0CW19 AL359920.1-201ENST00000618332 176 ntBASIC-3.99□□□□□ -3.05
LIMS3P0CW19 SNORD114-13-201ENST00000364377 74 ntBASIC-4.01□□□□□ -3.05
LIMS3P0CW19 RNU6-1044P-201ENST00000384755 107 ntBASIC-4.02□□□□□ -3.05
LIMS3P0CW19 RNU6-419P-201ENST00000517030 63 ntBASIC-4.03□□□□□ -3.05
LIMS3P0CW19 U7.4-201ENST00000614961 63 ntBASIC-4.03□□□□□ -3.05
LIMS3P0CW19 RNU6-940P-201ENST00000363433 104 ntBASIC-4.04□□□□□ -3.06
LIMS3P0CW19 RNU6-1276P-201ENST00000365372 104 ntBASIC-4.04□□□□□ -3.06
LIMS3P0CW19 MIR4666B-201ENST00000578142 81 ntBASIC-4.04□□□□□ -3.06
LIMS3P0CW19 RNU6-987P-201ENST00000384759 104 ntBASIC-4.05□□□□□ -3.06
LIMS3P0CW19 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-4.05□□□□□ -3.06
LIMS3P0CW19 MIR509-1-201ENST00000385265 94 ntBASIC-4.06□□□□□ -3.06
LIMS3P0CW19 MIR509-2-201ENST00000390724 91 ntBASIC-4.06□□□□□ -3.06
LIMS3P0CW19 Y_RNA.652-201ENST00000458902 102 ntBASIC-4.06□□□□□ -3.06
LIMS3P0CW19 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-4.07□□□□□ -3.06
LIMS3P0CW19 RNU6-1169P-201ENST00000363537 103 ntBASIC-4.09□□□□□ -3.06
LIMS3P0CW19 RNU6-742P-201ENST00000365289 107 ntBASIC-4.1□□□□□ -3.07
LIMS3P0CW19 Y_RNA.663-201ENST00000516043 101 ntBASIC-4.11□□□□□ -3.07
LIMS3P0CW19 MIR494-201ENST00000349529 81 ntBASIC-4.12□□□□□ -3.07
LIMS3P0CW19 RNU6-822P-201ENST00000362707 106 ntBASIC-4.12□□□□□ -3.07
LIMS3P0CW19 SNORD30.1-201ENST00000391309 70 ntBASIC-4.12□□□□□ -3.07
LIMS3P0CW19 RNA5SP106-201ENST00000517274 100 ntBASIC-4.12□□□□□ -3.07
LIMS3P0CW19 MIR3938-201ENST00000582157 103 ntBASIC-4.13□□□□□ -3.07
LIMS3P0CW19 MIR450A2-201ENST00000385022 100 ntBASIC-4.14□□□□□ -3.07
LIMS3P0CW19 MIR4511-201ENST00000582784 87 ntBASIC-4.14□□□□□ -3.07
LIMS3P0CW19 AC103706.3-201ENST00000636297 85 ntBASIC-4.14□□□□□ -3.07
LIMS3P0CW19 MIR548M-201ENST00000408260 86 ntBASIC-4.16□□□□□ -3.08
LIMS3P0CW19 RNU6-919P-201ENST00000516731 104 ntBASIC-4.16□□□□□ -3.08
LIMS3P0CW19 RNU6-737P-201ENST00000365370 107 ntBASIC-4.18□□□□□ -3.08
LIMS3P0CW19 Y_RNA.545-201ENST00000384652 105 ntBASIC-4.18□□□□□ -3.08
LIMS3P0CW19 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-4.19□□□□□ -3.08
LIMS3P0CW19 RNA5SP89-201ENST00000410300 108 ntBASIC-4.2□□□□□ -3.08
LIMS3P0CW19 RNU6-871P-201ENST00000516122 100 ntBASIC-4.2□□□□□ -3.08
LIMS3P0CW19 RNU6-215P-201ENST00000365169 102 ntBASIC-4.21□□□□□ -3.08
LIMS3P0CW19 RNY4P30-201ENST00000410216 95 ntBASIC-4.22□□□□□ -3.08
LIMS3P0CW19 Y_RNA.657-201ENST00000515983 102 ntBASIC-4.22□□□□□ -3.08
LIMS3P0CW19 RNY4P10-201ENST00000365571 96 ntBASIC-4.23□□□□□ -3.09
LIMS3P0CW19 RNU6-787P-201ENST00000384032 107 ntBASIC-4.23□□□□□ -3.09
LIMS3P0CW19 MIR4679-1-201ENST00000637619 75 ntBASIC-4.24□□□□□ -3.09
LIMS3P0CW19 SNORD20-201ENST00000384550 80 ntBASIC-4.26□□□□□ -3.09
LIMS3P0CW19 U6.111-201ENST00000636093 83 ntBASIC-4.27□□□□□ -3.09
LIMS3P0CW19 RNU6-539P-201ENST00000516665 103 ntBASIC-4.28□□□□□ -3.09
LIMS3P0CW19 MIR3910-1-201ENST00000580936 111 ntBASIC-4.28□□□□□ -3.09
LIMS3P0CW19 AC062037.1-201ENST00000605302 128 ntBASIC-4.28□□□□□ -3.09
LIMS3P0CW19 Y_RNA.43-201ENST00000362670 111 ntBASIC-4.29□□□□□ -3.1
LIMS3P0CW19 MIR3668-201ENST00000582138 75 ntBASIC-4.29□□□□□ -3.1
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms